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DNase-Seq

Known as: DNase I Hypersensitive Sites Sequencing 
A molecular genetic technique where genome-wide sequencing is performed on DNA regions that are super sensitive to cleavage by DNase I to identify… 
National Institutes of Health

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
Review
2020
Review
2020
A sampling of methods to study chromosome and genome structure and function
As a scientist, one’s perspective of the human genome is informed by the way it is studied – at the level of single nucleotides… 
2018
2018
TFmapper: A Tool for Searching Putative Factors Regulating Gene Expression Using ChIP-seq Data
Background Next-generation sequencing coupled to chromatin immunoprecipitation (ChIP-seq), DNase I hypersensitivity (DNase-seq… 
2018
2018
DNase-seq to Study Chromatin Accessibility in Early Xenopus tropicalis Embryos.
Transcriptional regulatory elements are typically found in relatively nucleosome-free genomic regions, often referred to as "open… 
2017
2017
The ENCODE Annotation Pipeline: Standard analyses for ChIP-seq, RNA-seq, DNase-seq, and whole-genome bisulfite experiments
2016
2016
NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets
The combination of massive parallel sequencing with a variety of modern DNA/RNA enrichment technologies provides means for… 
2014
2014
PIQ-ing into chromatin architecture
Decrypting the logic of gene regulation is aided by a breakthrough method for analyzing chromatin-accessibility data. 
2014
2014
Comparative evaluation of DNase-seq footprint identification strategies
DNase I is an enzyme preferentially cleaving DNA in highly accessible regions. Recently, Next-Generation Sequencing has been… 
2014
2014
Universal Count Correction for High-Throughput Sequencing
We show that existing RNA-seq, DNase-seq, and ChIP-seq data exhibit overdispersed per-base read count distributions that are not… 
2014
2014
Corrigendum: Comparative evaluation of DNase-seq footprint identification strategies
Figure ​Figure11 of the article Comparative evaluation of DNase-seq footprint identification strategies, by Barozzi et al. (2014… 
2013
2013
Isolation of nuclei for use in genome-wide DNase hypersensitivity assays to probe chromatin structure.
DNase hypersensitivity (DHS) analysis coupled with high-throughput DNA sequencing (DNase-seq) has emerged as a powerful tool to… 
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