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Gene Ontology: tool for the unification of biology
Genomic sequencing has made it clear that a large fraction of the genes specifying the core biological functions are shared by all eukaryotes. Knowledge of the biological role of such shared proteins… Expand
The genome sequence of Drosophila melanogaster.
The fly Drosophila melanogaster is one of the most intensively studied organisms in biology and serves as a model system for the investigation of many developmental and cellular processes common to… Expand
Annotation of functional variation in personal genomes using RegulomeDB.
As the sequencing of healthy and disease genomes becomes more commonplace, detailed annotation provides interpretation for individual variation responsible for normal and disease phenotypes. Current… Expand
GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
SUMMARY GO::TermFinder comprises a set of object-oriented Perl modules for accessing Gene Ontology (GO) information and evaluating and visualizing the collective annotation of a list of genes to GO terms. Expand
Saccharomyces Genome Database: the genomics resource of budding yeast
- J. Cherry, E. Hong, +19 authors E. D. Wong
- Computer Science, Medicine
- Nucleic Acids Res.
- 21 November 2011
The Saccharomyces Genome Database (SGD, http://www.yeastgenome.org) is the community resource for the yeast genome, its chromosomal features, their functions and interactions. Expand
SGD: Saccharomyces Genome Database
The Saccharomyces Genome Database (SGD) provides Internet access to the complete S.cerevisiae genomic sequence, its genes and products, the phenotypes of its mutants, and the literature supporting these data. Expand
The Encyclopedia of DNA elements (ENCODE): data portal update
- Carrie A. Davis, B. Hitz, +15 authors J. Cherry
- Biology, Computer Science
- Nucleic Acids Res.
- 6 November 2017
The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center has developed the ENCODE Portal database and website as the source for the data and metadata generated by theENCODE Consortium. Expand
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology. Like other ciliates, this species has separate germline and soma functions that are embodied by distinct… Expand
The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
- S. Engel, F. Dietrich, +14 authors J. Cherry
- Biology, Medicine
- G3: Genes, Genomes, Genetics
- 27 December 2013
The genome of the budding yeast Saccharomyces cerevisiae was the first completely sequenced from a eukaryote. It was released in 1996 as the work of a worldwide effort of hundreds of researchers. In… Expand
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)
The Saccharomyces Genome Database (SGD) resources, ranging from genetic and physical maps to genome-wide analysis tools, reflect the scientific progress in identifying genes and their functions over the last decade. Expand