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Stemloc

Stemloc is a program for pairwise RNA structural alignment based on probabilistic models of RNA structure known as Pair stochastic context-free… 
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6 relations
CygwinFASTA formatList of RNA structure prediction softwareList of sequence alignment software

Papers overview

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Review
2012
Review
2012
Chapter 3 Methods for Predicting RNA Secondary Structure
The formation of RNA structure is a hierarchical process: the secondary structure builds up by thermodynamically favorable stacks… 
2005
2005
Stem Stem Stem Stem Loop Loop Loop LoopLoop Loop Loop Loop Loop Loop Loop
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including… 
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