List of sequence alignment software

Known as: Burrows-Wheeler Aligner, Alignment program, Alignment 
This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence… (More)
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Highly Cited
2013
Highly Cited
2013
Summary: BWA-MEM is a new alignment algorithm for aligning sequence reads or assembly contigs against a large reference genome… (More)
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Highly Cited
2010
Highly Cited
2010
MOTIVATION Many programs for aligning short sequencing reads to a reference genome have been developed in the last 2 years. Most… (More)
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Highly Cited
2010
Highly Cited
2010
SUMMARY Multiple sequence alignment (MSA) is an important step in comparative sequence analyses. Parallelization is a key… (More)
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Highly Cited
2009
Highly Cited
2009
SUMMARY SOAP2 is a significantly improved version of the short oligonucleotide alignment program that both reduces computer… (More)
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Highly Cited
2009
Highly Cited
2009
MOTIVATION The enormous amount of short reads generated by the new DNA sequencing technologies call for the development of fast… (More)
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Highly Cited
2007
Highly Cited
2007
The recent availability of new, less expensive high-throughput DNA sequencing technologies has yielded a dramatic increase in the… (More)
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Highly Cited
2005
Highly Cited
2005
The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been… (More)
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Highly Cited
2002
Highly Cited
2002
MOTIVATION Progressive Multiple Sequence Alignment (MSA) methods depend on reducing an MSA to a linear profile for each alignment… (More)
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Highly Cited
1999
Highly Cited
1999
In recent years improvements to existing programs and the introduction of new iterative algorithms have changed the state-of-the… (More)
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Highly Cited
1999
Highly Cited
1999
MOTIVATION The performance and time complexity of an improved version of the segment-to-segment approach to multiple sequence… (More)
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