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List of RNA structure prediction software

This list of RNA structure prediction software is a compilation of software tools and web portals used for RNA structure prediction.
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Ajax (programming)BacktrackingComparison of nucleic acid simulation softwareConstraint programming
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Papers overview

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2012
2012
Monitoring NF-κB Transactivation Potential Via Real-Time PCR Quantification of IκB-α Gene Expression
AbstractBackground: Nuclear factor-kappa B (NF-κB) is an important transcription factor involved in the regulation of immune… Expand
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Highly Cited
2008
Highly Cited
2008
Obestatin Promotes Survival of Pancreatic β-Cells and Human Islets and Induces Expression of Genes Involved in the Regulation of β-Cell Mass and Function
OBJECTIVE—Obestatin is a newly discovered peptide encoded by the ghrelin gene whose biological functions are poorly understood… Expand
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Review
2006
Review
2006
CRD-BP mediates stabilization of βTrCP1 and c-myc mRNA in response to β-catenin signalling
Although constitutive activation of β-catenin/Tcf signalling is implicated in the development of human cancers, the mechanisms by… Expand
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Highly Cited
2005
Highly Cited
2005
How and why does β‐actin mRNA target?
β‐Actin mRNA is localized near the leading edge in several cell types where actin polymerization is actively promoting forward… Expand
Highly Cited
2002
Highly Cited
2002
Expression of β‐defensin 1 and 2 mRNA by human monocytes, macrophages and dendritic cells
Human β‐defensins are broad‐spectrum antimicrobial peptides known to be produced by epithelial cells. It was recently shown that… Expand
Highly Cited
2001
Highly Cited
2001
Blockade of NF-κB activity in human prostate cancer cells is associated with suppression of angiogenesis, invasion, and metastasis
Since the NF-κB/relA transcription factor is constitutively activated in human prostate cancer cells, we determined whether… Expand
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Highly Cited
2000
Highly Cited
2000
TNF-α Induction by LPS Is Regulated Posttranscriptionally via a Tpl2/ERK-Dependent Pathway
Abstract Tpl 2 knockout mice produce low levels of TNF-α when exposed to lipopolysaccharide (LPS) and they are resistant to LPS/D… Expand
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Highly Cited
1998
Highly Cited
1998
β-TrCP is a negative regulator of the Wnt/β-catenin signaling pathway and dorsal axis formation in Xenopus embryos
The Wnt/beta-catenin signaling pathway is responsible for the establishment of dorsoventral axis of Xenopus embryos. The recent… Expand
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Highly Cited
1997
Highly Cited
1997
Cloning and expression of rat 25-hydroxyvitamin D3-1α-hydroxylase cDNA
Abstract A full-length cDNA for the rat kidney mitochondrial cytochrome P450 mixed function oxidase, 25-hydroxyvitamin D3-1… Expand
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Highly Cited
1997
Highly Cited
1997
Diurnal variations of interleukin-1β mRNA and β-actin mRNA in rat brain
Interleukin-1β (IL-1β) is posited to play an important physiological role in brain functions in addition to its better defined… Expand
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