Sequence alignment

Known as: Protein sequence alignment, Maximal unique match, Alignment 
In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a… (More)
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Highly Cited
2011
Highly Cited
2011
HMMER is a software suite for protein sequence similarity searches using probabilistic methods. Previously, HMMER has mainly been… (More)
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Highly Cited
2010
Highly Cited
2010
MOTIVATION The Nearest Alignment Space Termination (NAST) tool is commonly used in sequence-based microbial ecology community… (More)
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Highly Cited
2009
Highly Cited
2009
SUMMARY The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference… (More)
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Highly Cited
2008
Highly Cited
2008
Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman… (More)
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Highly Cited
2006
Highly Cited
2006
In this paper, we present CONTRAlign, an extensible and fully automatic framework for parameter learning and protein pairwise… (More)
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Highly Cited
1999
Highly Cited
1999
MOTIVATION The program ESPript (Easy Sequencing in PostScript) allows the rapid visualization, via PostScript output, of… (More)
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Highly Cited
1998
Highly Cited
1998
The selection of a scoring matrix and gap penalty parameters continues to be an important problem in sequence alignment. We… (More)
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Highly Cited
1998
Highly Cited
1998
Pfam contains multiple alignments and hidden Markov model based profiles (HMM-profiles) of complete protein domains. The… (More)
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Highly Cited
1996
Highly Cited
1996
SEAVIEW and PHYLO_WIN are two graphic tools for X Windows-Unix computers dedicated to sequence alignment and molecular… (More)
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Highly Cited
1992
Highly Cited
1992
The <italic>optimal alignment</italic> or the <italic>weighted minimum edit distance</italic> between two DNA or amino acid… (More)
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