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BioPerl

BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral… 
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Papers overview

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2016
2016
Software PentaPlot : A software tool for the illustration of genome mosaicism
Background: Dekapentagonal maps depict the phylogenetic relationships of five genomes in a visually appealing diagram and can be… 
Review
2016
Review
2016
Biopython project update 2016
The Biopython Project is a long-running distributed collaborative effort, supported by the Open Bioinformatics Foundation, which… 
2014
2014
Generalized semantic Web service composition
With the increasing popularity of Web Services and Service-Oriented Architecture, we need infrastructure to discover and compose… 
2013
2013
INSILICO ANALYSIS OF PROTEINS INVOLVED IN TUBERCULOSIS AND ITS DOMAIN AND MOTIF SEARCH USING BIOPERL
The aim of the paper is to provide a detailed descr iption of the M. tuberculosis proteome by using advanced bioinformatic… 
2012
2012
Shifting the bioinformatics computing paradigm: A case study in parallelizing genome annotation using MAKER and Work Queue
Next generation sequencing technologies have enabled various entities, ranging from large sequencing centers to individual… 
2011
2011
Shifting the Bioinformatics Computing Paradigm : A Case Study using Genome Annotation
Next generation sequencing technologies have enabled various entities, ranging from large sequencing centers to individual… 
2011
2011
Biomanycores, open-source parallel code for many-core bioinformatics
Biomanycores is a collection of bioinformatics tools, designed to bridge the gap between researches in OpenCL/CUDA high… 
2008
2008
Take advantage of bioperl to promote bioinformatics
The Bioperl project is an International open-source collaboration of biologists, bioinformaticians,and computer scientists that… 
2007
2007
A System to Integrate and Manipulate Protein Database Using BioPerl and XML
The size, complexity and number of databases used for protein information have caused bioinformatics to lag behind in adapting to… 
2005
2005
Bioinformatic workflows: G-PIPE as an implementation
We present G-PIPE, a graphic pipeline generator for PISE that allows the definition of pipelines, parameterization of its… 
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