Skip to search formSkip to main content
You are currently offline. Some features of the site may not work correctly.

Alignment-free sequence analysis

On bioinformatics, alignment-free sequence analysis approaches to molecular sequence and structure data provide alternatives over alignment-based… Expand
Wikipedia

Related topics

Related topics

17 relations
BioinformaticsChaos gameComputer scienceDistance matrix
Expand

Broader (1)

Computational biology

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2020
2020
An Extensible, Scalable Spark Platform for Alignment-free Genomic Analysis - Version 2
Motivation: Alignment-free distance and similarity functions (AF functions, for short) are a computationally convenient… Expand
  • table 1
  • table 2
  • figure 1
  • figure 2
  • figure 4
2017
2017
msktuple: An integrated R library for alignment-free multiple sequence k-tuple analysis
Abstract Recently alignment-free sequence comparison methods based on promoter-frequency distance measures have gained popularity… Expand
2017
2017
Role of Information Theory, Chaos Theory, and Linear Algebra and Statistics in development of alignment-free sequence analysis
 
Highly Cited
2015
Highly Cited
2015
Whole Genome Phylogeny of Bacillus by Feature Frequency Profiles (FFP)
Fifty complete Bacillus genome sequences and associated plasmids were compared using the “feature frequency profile” (FFP) method… Expand
  • table 1
  • figure 1
  • figure 2
  • figure 3
  • figure 4
2014
2014
Random projection based clustering for population genomics
Recent data revolution in population genomics for bacteria has increased the size of aligned sequence data sets by two-to-three… Expand
  • figure 1
  • figure 2
  • table I
  • table II
  • figure 3
2013
2013
Quantum Sequence Analysis: A New Alignment-free Technique For Analyzing Sequences in Feature Space
In this paper, we propose a new alignment-free sequence analysis technique (quantum sequence analysis) that can be used to… Expand
  • figure 1
2010
2010
Alignment-free Sequence Analysis Using Extensible Markov Models
Profile models based on Hidden Markov Models (HMM) for sequence studies have gained visibility among researchers. While the… Expand
  • figure 1
  • figure 3
  • figure 2
  • figure 4
  • table 1
By clicking accept or continuing to use the site, you agree to the terms outlined in our Privacy Policy, Terms of Service, and Dataset License
ACCEPT & CONTINUE