Skip to search form
Skip to main content
Skip to account menu
Semantic Scholar
Semantic Scholar's Logo
Search 237,487,552 papers from all fields of science
Search
Sign In
Create Free Account
PatternHunter
PatternHunter is a commercially available homology search instrument software that uses sequence alignment techniques. It was initially developed in…
Expand
Wikipedia
(opens in a new tab)
Create Alert
Alert
Related topics
Related topics
9 relations
BLAST
FASTA
List of sequence alignment software
MUMmer
Expand
Broader (1)
Bioinformatics
Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
Review
2016
Review
2016
From BLAST to PatternHunter: the Development of Alignment Tools and Genomic Research
Wei Wei
2016
Corpus ID: 64376293
Developed in 1990, BLAST remained a most widely used heuristic in homology search. Its concept and algorithm of using seed…
Expand
2013
2013
Local Similarities Approximation in DNA Sequences Based on Pairwise Sequence Aligner Algorithm
Najah Al-shanableh
,
H. Al-zoubi
,
M. A. Rababaa
2013
Corpus ID: 117746489
Sequence alignment is a way of arranging primary sequences of DNA, RNA, or protein to identify regions of similarity. This region…
Expand
2009
2009
Spaced Seeds Design Using Perfect Rulers ?
Lavinia Egidi
,
Giovanni Manzini
2009
Corpus ID: 268073221
We consider the problem of lossless spaced seed design for approximate pattern matching. We show that, using mathematical objects…
Expand
2008
2008
YASS : Recherche de similaritées dans les séquences d ’ ADN
L. Noé
,
Gregory Kucherov Thème
2008
Corpus ID: 9979947
We describe YASS – a new tool for finding local similarities in DNA sequences. The YASS algorithm first scans the sequence(s) and…
Expand
Review
2007
Review
2007
Basic Sequence Analysis and Annotation Laboratory
Reinhard Engels
,
Tamara Yu
,
C. Burge
,
J. Mesirov
,
David DeCaprio
,
J. Galagan
2007
Corpus ID: 17669188
Summary: Combo is a comparative genome browser that provides a dynamic view of whole genome alignments along with their…
Expand
2005
2005
Whole Genome Alignments Based On Local Alignments
Jiyang Yu
,
T. Lam
,
Yiu
2005
Corpus ID: 16319526
Given the genomes (DNA) of two related species, one of the whole genome alignment tasks is to locate regions on the genomes that…
Expand
2004
2004
Sensibilite de graines espacees de type subset seed
L. Noé
,
Grégory Kucherov
2004
Corpus ID: 81013279
Les heuristiques d’alignement local à base de graines espacées (BLASTZ [6], PatternHunter [4, 3], YASS [5]) dépendent très…
Expand
2002
2002
Optimal Spaced Seeds for Finding Homologous Coding Regions
D. Browns
2002
Corpus ID: 17482387
We study the problem of computing optimal spaced seeds for identifying homologous coding DNA sequences in large genomic data sets…
Expand