De novo protein structure prediction

Known as: Ab initio structure prediction, De novo 
In computational biology, de novo protein structure prediction refers to an algorithmic process by which protein tertiary structure is predicted from… (More)
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Broader (1)

Bioinformatics
CASPComputational biologyFolding@homeLoop modeling
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Papers overview

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2018
2018
Sequential search leads to faster, more efficient fragment-based de novo protein structure prediction
Motivation Most current de novo structure prediction methods randomly sample protein conformations and thus require large amounts… (More)
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2017
2017
Improving de novo protein structure prediction using contact maps information
The use of residue-residue contact maps in protein structure prediction (PSP) has proved promising during the last CASP editions… (More)
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2016
2016
UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling
MOTIVATION Recent experimental studies have suggested that proteins fold via stepwise assembly of structural units named 'foldons… (More)
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2016
2016
Evolutionary coupling methods in de novo protein structure prediction
xiii 1 General Introduction to Protein Structure Prediction 1 1.1 Protein Structure Determination… (More)
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2016
2016
LRFragLib: an effective algorithm to identify fragments for de novo protein structure prediction
Motivation The quality of fragment library determines the efficiency of fragment assembly, an approach that is widely used in… (More)
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Highly Cited
2008
Highly Cited
2008
De novo identification of highly diverged protein repeats by probabilistic consistency
MOTIVATION An estimated 25% of all eukaryotic proteins contain repeats, which underlines the importance of duplication for… (More)
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2007
2007
De Novo Protein Structure Prediction
An unparalleled amount of sequence data is being made available from large-scale genome sequencing efforts. The data provide a… (More)
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2007
2007
Protein structure prediction: Combining de novo modeling with sparse experimental data
Routine structure prediction of new folds is still a challenging task for computational biology. The challenge is not only in the… (More)
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Review
2006
Review
2006
Advances in protein structure prediction and de novo protein design : A review
This review provides an exposition to the important problems of (i) structure prediction in protein folding and (ii) de novo… (More)
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Highly Cited
2004
Highly Cited
2004
Protein structure prediction and analysis using the Robetta server
The Robetta server (http://robetta.bakerlab.org) provides automated tools for protein structure prediction and analysis. For… (More)
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