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Base Sequence
Known as:
Sequence
, Nucleotide Sequences
, Base Sequences
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The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence.
National Institutes of Health
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Related topics
Related topics
19 relations
Broader (1)
Chromosome Mapping
Narrower (6)
Codon (nucleotide sequence)
Conserved Sequence
CpG Islands
DNA Sequence
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Denaturing Gradient Gel Electrophoresis
Genes
Genetic Code
Microarray Analysis
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Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
Review
2015
Review
2015
limma powers differential expression analyses for RNA-sequencing and microarray studies
M. Ritchie
,
B. Phipson
,
+4 authors
G. Smyth
Nucleic acids research
2015
Corpus ID: 301840
limma is an R/Bioconductor software package that provides an integrated solution for analysing data from gene expression…
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Highly Cited
2015
Highly Cited
2015
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
M. Pertea
,
G. Pertea
,
C. Antonescu
,
Tsung-Cheng Chang
,
J. Mendell
,
S. Salzberg
Nature Biotechnology
2015
Corpus ID: 11360661
Methods used to sequence the transcriptome often produce more than 200 million short sequences. We introduce StringTie, a…
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Highly Cited
2013
Highly Cited
2013
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin
,
C. A. Davis
,
+6 authors
Thomas R. Gingeras
Bioinform.
2013
Corpus ID: 11244195
MOTIVATION Accurate alignment of high-throughput RNA-seq data is a challenging and yet unsolved problem because of the non…
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Highly Cited
2013
Highly Cited
2013
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
B. Haas
,
A. Papanicolaou
,
+20 authors
A. Regev
Nature Protocols
2013
Corpus ID: 14551253
De novo assembly of RNA-seq data enables researchers to study transcriptomes without the need for a genome sequence; this…
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Highly Cited
2012
Highly Cited
2012
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.
C. Trapnell
,
Adam Roberts
,
+7 authors
L. Pachter
Nature protocols
2012
Corpus ID: 54525139
Recent advances in high-throughput cDNA sequencing (RNA-seq) can reveal new genes and splice variants and quantify expression…
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Highly Cited
2009
Highly Cited
2009
TopHat: discovering splice junctions with RNA-Seq
C. Trapnell
,
L. Pachter
,
S. Salzberg
Bioinform.
2009
Corpus ID: 1866358
Motivation: A new protocol for sequencing the messenger RNA in a cell, known as RNA-Seq, generates millions of short sequence…
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Highly Cited
2007
Highly Cited
2007
High-Resolution Profiling of Histone Methylations in the Human Genome
A. Barski
,
Suresh Cuddapah
,
+6 authors
K. Zhao
Cell
2007
Corpus ID: 6326093
Highly Cited
2000
Highly Cited
2000
The genome sequence of Drosophila melanogaster.
M. Adams
,
S. Celniker
,
+192 authors
J. Venter
Science
2000
Corpus ID: 4494489
The fly Drosophila melanogaster is one of the most intensively studied organisms in biology and serves as a model system for the…
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Highly Cited
1995
Highly Cited
1995
AFLP: a new technique for DNA fingerprinting.
P. Vos
,
R. Hogers
,
+7 authors
M. Kuiper
Nucleic acids research
1995
Corpus ID: 20329444
A novel DNA fingerprinting technique called AFLP is described. The AFLP technique is based on the selective PCR amplification of…
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Highly Cited
1990
Highly Cited
1990
DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.
J. Williams
,
A. Kubelik
,
K. Livak
,
J. Rafalski
,
S. Tingey
Nucleic acids research
1990
Corpus ID: 18160330
Molecular genetic maps are commonly constructed by analyzing the segregation of restriction fragment length polymorphisms (RFLPs…
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