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UCLUST
UCLUSTis an algorithm designed to cluster nucleotide or amino-acid sequences into clusters based on sequence similarity. The algorithm was published…
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3 relations
Algorithm
Sequence clustering
Broader (1)
Metagenomics
Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
2018
2018
Comparative Analysis of Sequence Clustering Methods for Deduplication of Biological Databases
Qingyu Chen
,
Yu Wan
,
Xiuzhen Zhang
,
Yang Lei
,
J. Zobel
,
Karin M. Verspoor
ACM Journal of Data and Information Quality
2018
Corpus ID: 4395430
The massive volumes of data in biological sequence databases provide a remarkable resource for large-scale biological studies…
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2018
2018
Choosing Non-redundant Representative Subsets Of Protein Sequence Data Sets Using Submodular Optimization
Maxwell W. Libbrecht
,
J. Bilmes
,
William Stafford Noble
ACM International Conference on Bioinformatics…
2018
Corpus ID: 52098455
Selecting a non-redundant representative subset of sequences is a common step in many bioinformatics workflows, such as the…
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2017
2017
Distinct sensitivity of fungal freshwater guilds to water quality
O. Röhl
,
D. Peršoh
,
+6 authors
D. Begerow
Mycological progress
2017
Corpus ID: 37466342
Multiple anthropogenic stressors have been shown to impact animal and plant communities in freshwater ecosystems, but the…
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2017
2017
Semantically Defining Populations for 'Omics Research
R. Walls
,
P. Buttigieg
2017
Corpus ID: 90976270
The study of populations is central to ‘omics research, whether sequencing environmental samples, controlling for population…
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2016
2016
The Influence of Restoration on Salt Marsh Microbial Communities and Senetrification Capacity
Jennifer Browen
,
Chistopher Lynum
,
Pablo Carrión
2016
Corpus ID: 31070209
Salt marshes play a large role in filtering pollution and nutrients as well as providing habitat for a wide array of species…
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2015
2015
uCLUST - A NEW ALGORITHM FOR CLUSTERING UNSTRUCTURED DATA
D. Prasad
,
Sathya Madhusudanan
,
S. Jaganathan
2015
Corpus ID: 59129787
Data that resides in a fixed field within a record or file is called structured data and have a defined schema. Unstructured Data…
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Highly Cited
2013
Highly Cited
2013
Illumina metabarcoding of a soil fungal community
P. Schmidt
,
Miklós Bálint
,
B. Greshake
,
C. Bandow
,
J. Römbke
,
I. Schmitt
2013
Corpus ID: 16675418
2013
2013
kClust: fast and sensitive clustering of large protein sequence databases
Maria Hauser
,
Christian E. Mayer
,
J. Söding
BMC Bioinformatics
2013
Corpus ID: 255795573
Fueled by rapid progress in high-throughput sequencing, the size of public sequence databases doubles every two years. Searching…
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2012
2012
DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences
Yang Ruan
,
S. Ekanayake
,
+4 authors
G. Fox
ACM International Conference on Bioinformatics…
2012
Corpus ID: 6613714
The recent advance in next generation sequencing (NGS) techniques has enabled the direct analysis of the genetic information…
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2011
2011
CloVR-Metagenomics: Functional and taxonomic microbial community characterization from metagenomic whole-genome shotgun (WGS) sequences – standard operating procedure, version 1.0
J. White
,
Cesar Arze
,
Malcom Matalka
,
O. White
,
Samuel V. Angiuoli
,
W. F. Fricke
2011
Corpus ID: 201187755
The CloVR-Metagenomics pipeline employs several well-known tools and protocols for the analysis of metagenomic whole-genome…
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