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UCLUST

UCLUSTis an algorithm designed to cluster nucleotide or amino-acid sequences into clusters based on sequence similarity. The algorithm was published… Expand
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Related topics

3 relations
AlgorithmSequence clustering

Broader (1)

Metagenomics

Papers overview

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2018
2018
MeShClust: an intelligent tool for clustering DNA sequences
Sequence clustering is a fundamental step in analyzing DNA sequences. Widely-used software tools for sequence clustering utilize… Expand
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2018
2018
Comparative Analysis of Sequence Clustering Methods for Deduplication of Biological Databases
The massive volumes of data in biological sequence databases provide a remarkable resource for large-scale biological studies… Expand
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2018
2018
Choosing Non-redundant Representative Subsets Of Protein Sequence Data Sets Using Submodular Optimization
Selecting a non-redundant representative subset of sequences is a common step in many bioinformatics workflows, such as the… Expand
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2017
2017
Better Greedy Sequence Clustering with Fast Banded Alignment
Comparing a string to a large set of sequences is a key subroutine in greedy heuristics for clustering genomic data. Clustering… Expand
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2016
2016
Distinct sensitivity of fungal freshwater guilds to water quality
Multiple anthropogenic stressors have been shown to impact animal and plant communities in freshwater ecosystems, but the… Expand
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2015
2015
uCLUST - A NEW ALGORITHM FOR CLUSTERING UNSTRUCTURED DATA
Data that resides in a fixed field within a record or file is called structured data and have a defined schema. Unstructured Data… Expand
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2015
2015
Predicting Clinical Phenotype Using OTU-Based Metagenome Representation
We demonstrate a computational method to predict the clinical phenotypes of a patient from raw metagenomic sequence read data. We… Expand
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Highly Cited
2013
Highly Cited
2013
Illumina metabarcoding of a soil fungal community
Abstract Next generation metabarcoding is becoming an indispensable tool in fungal community ecology. Here we tested Illumina… Expand
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2012
2012
DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences
The recent advance in next generation sequencing (NGS) techniques has enabled the direct analysis of the genetic information… Expand
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2011
2011
CloVR-Metagenomics: Functional and taxonomic microbial community characterization from metagenomic whole-genome shotgun (WGS) sequences – standard operating procedure, version 1.0
The CloVR-Metagenomics pipeline employs several well-known tools and protocols for the analysis of metagenomic whole-genome… Expand
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