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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
- M. Langille, Jesse R. Zaneveld, C. Huttenhower
- BiologyNature Biotechnology
- 25 August 2013
TLDR
PyNAST: a flexible tool for aligning sequences to a template alignment
- J. Caporaso, K. Bittinger, F. Bushman, T. DeSantis, G. Andersen, R. Knight
- Computer ScienceBioinform.
- 13 November 2009
Motivation: The Nearest Alignment Space Termination (NAST) tool is commonly used in sequence-based microbial ecology community analysis, but due to the limited portability of the original…
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
- E. Bolyen, J. Rideout, J. Caporaso
- MedicineNature Biotechnology
- 1 August 2019
TLDR
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- J. Caporaso, C. Lauber, R. Knight
- BiologyThe ISME Journal
- 8 March 2012
TLDR
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
- N. Bokulich, Sathish Subramanian, J. Caporaso
- BiologyNature Methods
- 21 November 2012
TLDR
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- J. Caporaso, C. Lauber, R. Knight
- BiologyProceedings of the National Academy of Sciences
- 3 June 2010
TLDR
Soil bacterial and fungal communities across a pH gradient in an arable soil
TLDR
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
- N. Fierer, J. Leff, J. Caporaso
- Biology, MedicineProceedings of the National Academy of Sciences
- 10 December 2012
TLDR
Moving pictures of the human microbiome
- J. Caporaso, C. Lauber, R. Knight
- BiologyGenome Biology
- 30 May 2011
TLDR
Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities
- Justin Kuczynski, J. Stombaugh, William A. Walters, Antonio Gonzalez, J. Caporaso, R. Knight
- BiologyCurrent protocols in bioinformatics
- 1 December 2011
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