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SAMtools

Known as: BAM format, Sam, Sequence alignment map 
Like many Unix commands, SAMtool commands follow a stream model, where data runs through each command as if carried on a conveyor belt. This allows… 
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Related topics

Related topics

10 relations
Asymmetric Numeral SystemsBiopythonGigabyteList of sequence alignment software

Broader (1)

Public-domain software

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2018
2018
Genetic and Phytopathological Studies on Charcoal Rot Resistance in Soybean [Glycine max (L) Merr.]
Charcoal rot of soybean (Glycine max (L.), caused by Macrophomina phaseolina is a disease of economic significance in the United… 
2017
2017
Coding Complete Genome for the Mogiana Tick Virus, a Jingmenvirus Isolated from Ticks in Brazil
Abstract : Mogiana tick virus (MGTV) is a segmented Jingmenvirus isolated in 2011 from cattle ticks in Brazil. Here, we present a… 
2016
2016
A MapReduce Framework for DNA Sequencing Data Processing
Genomics and Next Generation Sequencers (NGS) like Illumina Hiseq produce data in the order of 200 billion base pairs in a single… 
2016
2016
A method for hypermutated viral sequences detection in fastq and bam format files
2014
2014
Removing Sequential Bottlenecks in Analysis of Next-Generation Sequencing Data
Throughput from sequencing instruments has been increasing in an unprecedented speed, leading to an explosion of the next… 
2014
2014
Whole Genome Epidemiological Typing of Salmonella
Background: Technological advances in high throughput genome sequencing are making whole genome sequencing (WGS) available as a… 
2013
2013
The Genetic Architecture of Complex Traits in Yeast
Many phenotypes of biological, medical, and agricultural relevance display continuous variation and complex genetic inheritance… 
2013
2013
Discovery of Phylogenetic Relevant Y-chromosome Variants in 1000 Genomes Project Data
Current Y chromosome research is limited in the poor resolution of Y chromosome phylogenetic tree. Entirely sequenced Y… 
2013
2013
Transcriptomic analysis of the polyploid Adriatic sturgeon (Acipenser naccarii)
Sturgeons are a group of Condrostean fishes with very high evolutionary, economical and conservation interest. The eggs of these… 
Review
2013
Review
2013
Differential expression analysis methods for ribonucleic acid-sequencing data
Introduction High-throughput mRNA sequencing (also known as RNA-Seq) promises to be the technique of choice for studying… 
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