MDGRAPE-3 is an ultra-high performance petascale supercomputer system developed by the RIKEN research institute in Japan. It is a special purposeâ€¦Â (More)

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2010

2010

The present study discusses some numerical techniques on the simultaneous use of the Fast Multipole Method (FMM) and specialâ€¦Â (More)

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2010

2010

The calculation of vortex method has been accelerated by using special-purpose computers, MDGRAPE-2 and MDGRAPE-3, respectivelyâ€¦Â (More)

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2009

2009

- Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Siegfried HÃ¶finger
- Journal of Computational Chemistry
- 2009

Scientific applications do frequently suffer from limited compute performance. In this article, we investigate the suitability ofâ€¦Â (More)

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2009

2009

- Gota Kikugawa, Rossen Apostolov, +4 authors Yasushige Yonezawa
- Journal of Computational Chemistry
- 2009

We describe the application of a special purpose board for molecular dynamics simulations, named MDGRAPE-3, to the problem ofâ€¦Â (More)

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2009

2009

Statistical characteristics of two-dimensional point vortex systems in positive and negative temperature states are examined byâ€¦Â (More)

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2007

2007

- Yousuke Ohno, Eiji Nishibori, +8 authors Makoto Taiji
- Proceedings of the 2007 ACM/IEEE Conference onâ€¦
- 2007

We have achieved a sustained calculation speed of 281 Tflops for the optimization of the 3-D structures of proteins from the Xâ€¦Â (More)

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2007

2007

Commercial graphics processors (GPUs) have high compute capacity at very low cost, which makes them attractive for generalâ€¦Â (More)

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2007

2007

In this paper, we propose a fast and efficient method for drawing very large-scale graph data. The conventional force-directedâ€¦Â (More)

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2006

2006

- Tetsu Narumi, Yousuke Ohno, +8 authors Mitsuru Ikei
- SC
- 2006

We have achieved a sustained performance of 55 TFLOPS for molecular dynamics simulations of the amyloid fibril formation ofâ€¦Â (More)

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2003