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Phylogenetic profiling
Phylogenetic profiling is a bioinformatics technique in which the joint presence or joint absence of two traits across large numbers of species is…
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Bioinformatics
Homology (biology)
Inferring horizontal gene transfer
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Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
2015
2015
CentroidBLAST: Accelerating Sequence Search via Clustering
Wu-chun Feng
,
K. Krommydas
,
Liqing Zhang
2015
Corpus ID: 18819573
BLAST, short for Basic Local Alignment Search Tool, searches for regions of local similarity between a query sequence and a large…
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Review
2008
Review
2008
Phaseolin: Structure and Evolution
Chandrakanth Emani
,
T. Hall
2008
Corpus ID: 15870760
Phaseolin is the salt-soluble glycoprotein or the group of polypeptides of the French bean (Phaseolus vulgaris L.) that account…
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2006
2006
Analyse du cytosquelette par des approches bioinformatiques à haut débit de génomique comparative et de transcriptomique
Jean-Denis Muller
2006
Corpus ID: 160325934
Le travail presente dans cette these concerne l’etude du cytosquelette par des techniques de bioinformatique et de biologie a…
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2006
2006
Joint learning of logic relationships for studying protein function using phylogenetic profiles and the rosetta stone method
Xin Zhang
,
Seungchan Kim
,
Tie Wang
,
Chitta Baral
IEEE Transactions on Signal Processing
2006
Corpus ID: 131323
Identifying logic relationships between proteins is essential for understanding their function within cells. Previous studies…
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2006
2006
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
S. Snir
,
L. Pachter
Annual International Conference on Research in…
2006
Corpus ID: 7692357
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is…
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Highly Cited
2005
Highly Cited
2005
OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements
C. Dessimoz
,
G. Cannarozzi
,
+4 authors
G. Gonnet
Comparative Genomics
2005
Corpus ID: 17206694
The OMA project is a large-scale effort to identify groups of orthologs from complete genome data, currently 150 species. The…
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Review
2005
Review
2005
Contextual inference of protein function
A. Seshasayee
,
M. Babu
2005
Corpus ID: 26745156
The objective of this article is to provide an overview of various contextual, homology-independent methods for inferring protein…
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2004
2004
A graph analysis method to detect metabolic sub-networks based on phylogenetic profile
Shoko Miyake
,
Y. Takenaka
,
H. Matsuda
Proceedings. IEEE Computational Systems…
2004
Corpus ID: 15074538
To elucidate fundamental constituting principle of functional modules or building blocks of metabolic networks, computational…
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2004
2004
Functional genomics: Guilt by multiple association
L. Ettwiller
,
B. Paten
Heredity
2004
Corpus ID: 43821141
Common sense often tells us that if two entities share features then knowledge can be inferred about them: the principle of…
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2002
2002
Functional Consequences in Metabolic Pathways from Phylogenetic Profiles
Yonatan Bilu
,
M. Linial
Workshop on Algorithms in Bioinformatics
2002
Corpus ID: 30109233
Phylogenetic profiling is an ingenious computational method for identifying functional linkage between proteins. It is based on…
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