Phylogenetic profiling

Phylogenetic profiling is a bioinformatics technique in which the joint presence or joint absence of two traits across large numbers of species is… (More)
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BioinformaticsHomology (biology)Inferring horizontal gene transferMutual information
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Papers overview

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2016
2016
SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles
UNLABELLED A successful approach for predicting functional associations between non-homologous genes is to compare their… (More)
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2014
2014
TIPP: taxonomic identification and phylogenetic profiling
MOTIVATION Abundance profiling (also called 'phylogenetic profiling') is a crucial step in understanding the diversity of a… (More)
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2014
2014
Diversity and phylogenetic profiling of niche-specific Bacilli from extreme environments of India
The diversity of culturable, aerobic and heterotrophic Bacillus and Bacillus-derived genera (BBDG) was investigated in various… (More)
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2012
2012
NAPP: the Nucleic Acid Phylogenetic Profile Database
Nucleic acid phylogenetic profiling (NAPP) classifies coding and non-coding sequences in a genome according to their pattern of… (More)
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2008
2008
Complex phylogenetic profiling reveals fundamental genotype-phenotype associations
We have developed a computational technique refereed to as complex phylogenetic profiling. Our approach combines logic analyses… (More)
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2007
2007
Towards validating the hypothesis of phylogenetic profiling
As the number of fully sequenced genome increases, the need is greater for bioinformatics to predict or annotate genes of a newly… (More)
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2006
2006
Comparative assessment of performance and genome dependence among phylogenetic profiling methods
The rapidly increasing speed with which genome sequence data can be generated will be accompanied by an exponential increase in… (More)
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2005
2005
Gene annotation and network inference by phylogenetic profiling
Phylogenetic analysis is emerging as one of the most informative computational methods for the annotation of genes and… (More)
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Highly Cited
2003
Highly Cited
2003
Identification of functional links between genes using phylogenetic profiles
MOTIVATION Genes with identical patterns of occurrence across the phyla tend to function together in the same protein complexes… (More)
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Highly Cited
2002
Highly Cited
2002
A tree kernel to analyse phylogenetic profiles
MOTIVATION The phylogenetic profile of a protein is a string that encodes the presence or absence of the protein in every fully… (More)
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