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Phylogenetic profiling

Phylogenetic profiling is a bioinformatics technique in which the joint presence or joint absence of two traits across large numbers of species is… Expand
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BioinformaticsHomology (biology)Inferring horizontal gene transferMutual information
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Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2015
2015
CentroidBLAST: Accelerating Sequence Search via Clustering
BLAST, short for Basic Local Alignment Search Tool, searches for regions of local similarity between a query sequence and a large… Expand
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Highly Cited
2014
Highly Cited
2014
Diversity and phylogenetic profiling of niche-specific Bacilli from extreme environments of India
The diversity of culturable, aerobic and heterotrophic Bacillus and Bacillus-derived genera (BBDG) was investigated in various… Expand
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Review
2008
Review
2008
Phaseolin: Structure and Evolution
Phaseolin is the salt-soluble glycoprotein or the group of polypeptides of the French bean (Phaseolus vulgaris L.) that account… Expand
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2006
2006
Analyse du cytosquelette par des approches bioinformatiques à haut débit de génomique comparative et de transcriptomique
Le travail presente dans cette these concerne l’etude du cytosquelette par des techniques de bioinformatique et de biologie a… Expand
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2006
2006
Joint learning of logic relationships for studying protein function using phylogenetic profiles and the rosetta stone method
Identifying logic relationships between proteins is essential for understanding their function within cells. Previous studies… Expand
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Highly Cited
2005
Highly Cited
2005
OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements
The OMA project is a large-scale effort to identify groups of orthologs from complete genome data, currently 150 species. The… Expand
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Review
2005
Review
2005
Contextual inference of protein function
The objective of this article is to provide an overview of various contextual, homology-independent methods for inferring protein… Expand
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2004
2004
A graph analysis method to detect metabolic sub-networks based on phylogenetic profile
To elucidate fundamental constituting principle of functional modules or building blocks of metabolic networks, computational… Expand
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2004
2004
Functional genomics: Guilt by multiple association
Common sense often tells us that if two entities share features then knowledge can be inferred about them: the principle of… Expand
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2002
2002
Functional Consequences in Metabolic Pathways from Phylogenetic Profiles
Phylogenetic profiling is an ingenious computational method for identifying functional linkage between proteins. It is based on… Expand
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