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Multiple sequence alignment

Known as: MSA, Multiple alignment 
A multiple sequence alignment (MSA) is a sequence alignment of three or more biological sequences, generally protein, DNA, or RNA. In many cases, the… Expand
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Papers overview

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2014
2014
Part I: Theory 1. Dynamic Programming OE. Ufuk Nalbantoglu 2. Heuristic Alignment Methods Osamu Gotoh 3. Objective Functions… Expand
Highly Cited
2014
Highly Cited
2014
In this paper, we introduce a new and highly scalable algorithm, PASTA, for large-scale multiple sequence alignment estimation… Expand
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Highly Cited
2009
Highly Cited
2009
Summary: infernal builds consensus RNA secondary structure profiles called covariance models (CMs), and uses them to search… Expand
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Highly Cited
2008
Highly Cited
2008
Multiple sequence alignment, known as NP-complete problem, is among the most important and challenging tasks in computational… Expand
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Highly Cited
2004
Highly Cited
2004
  • R. Edgar
  • Proceedings. IEEE Computational Systems…
  • 2004
  • Corpus ID: 338781
We present MUSCLE, a new program for creating multiple alignments of protein sequences. MUSCLE achieves the highest scores so far… Expand
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Highly Cited
2003
Highly Cited
2003
We address the text-to-text generation problem of sentence-level paraphrasing --- a phenomenon distinct from and more difficult… Expand
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Highly Cited
2001
Highly Cited
2001
This paper analyzes the computational complexity of computing the optimal alignment of a set of sequences under the sum of all… Expand
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Highly Cited
2000
Highly Cited
2000
  • E. Beitz
  • Bioinform.
  • 2000
  • Corpus ID: 8912550
Motivation: Typesetting, shading and labeling of nucleotide and peptide alignments using standard word processing or graphics… Expand
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Highly Cited
1996
Highly Cited
1996
A method is described to assess directly the number of DNA sequence transformations, evolutionary events, required by a… Expand
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