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Molecular design software

Molecular design software is software for molecular modeling, that provides special support for developing molecular models de novo. In contrast to… 
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Related topics

Related topics

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AbaloneAscalaph DesignerAssisted Model Building with Energy Refinement (AMBER)Avogadro

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2014
2014
Modular design of coiled coils to target bZIP transcription factors
Basic leucine-zipper (bZIP) transcription factors regulate many important cellular processes including tissue differentiation… 
2013
2013
Chimeric Glutathione S-Transferases: Properties and Thermodynamic Stability
The ultimate goal in protein design is the creation of proteins with desired functions. We have constructed a set of engineered… 
2012
2012
Efficient and Exact MAP-MRF Inference using Branch and Bound
We propose two novel Branch-and-Bound (BB) methods to efficiently solve exact MAPMRF inference on problems with a large number of… 
Highly Cited
2004
Highly Cited
2004
A Semidefinite Programming Approach to Side Chain Positioning with New Rounding Strategies
Side chain positioning is an important subproblem of the general protein-structure-prediction problem, with applications in… 
2004
2004
Controlling proteolytic degradation of the methionine enriched MB-1Trp protein
Protein design is currently used for the creation of new proteins with desirable traits, which include a superior nutritional… 
1998
1998
Backbone flexibility in protein design theory and experiment
The role of backbone flexibility in protein design was studied. First, the effect of explicit backbone motion on the selection of… 
Highly Cited
1997
Highly Cited
1997
Design of a Unique Protein Scaffold for Maquettes
Heme proteins serve a wide variety of functions in the biological milieu.1 Our approach to the study of protein structure… 
1997
1997
Robustness and efficiency in inverse protein folding
Highly Cited
1996
Highly Cited
1996
Redox-Triggered Secondary Structure Changes in the Aggregated States of a Designed Methionine-Rich Peptide
We have previously shown that methionine can be used as a “switchable” residue for the design of peptides with alternative… 
Highly Cited
1989
Highly Cited
1989
Transfer of a β-turn structure to a new protein context
FOUR-RESIDUE β-turns and larger loop structures represent a significant fraction of globular protein surfaces and play an… 
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