Assisted Model Building with Energy Refinement (AMBER)

Known as: AMBER (file format), AMBER (molecular dynamics), Amber (disambiguation) 
Assisted Model Building with Energy Refinement (AMBER) is a family of force fields for molecular dynamics of biomolecules originally developed by… (More)
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Highly Cited
2014
Highly Cited
2014
This paper presents a human-inspired control approach to bipedal robotic walking: utilizing human data and output functions that… (More)
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Highly Cited
2011
Highly Cited
2011
MDAnalysis is an object-oriented library for structural and temporal analysis of molecular dynamics (MD) simulation trajectories… (More)
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Highly Cited
2009
Highly Cited
2009
Here we present a program aimed at free-energy calculations in molecular systems. It consists of a series of routines that can be… (More)
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Highly Cited
2006
Highly Cited
2006
MOTIVATION Protein assemblies are currently poorly represented in structural databases and their structural elucidation is a key… (More)
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Highly Cited
2005
Highly Cited
2005
We describe the development, current features, and some directions for future development of the Amber package of computer… (More)
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Highly Cited
2005
Highly Cited
2005
The structure and function of macromolecules depend critically on the ionization (protonation) states of their acidic and basic… (More)
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Highly Cited
2003
Highly Cited
2003
Quantitative free energy computation involves both using a model that is sufficiently faithful to the experimental system under… (More)
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Highly Cited
1996
Highly Cited
1996
AutoDock 2.4 predicts the bound conformations of a small, flexible ligand to a nonflexible macromolecular target of known… (More)
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Highly Cited
1996
Highly Cited
1996
We investigate whether the 7r-calculus is able to serve as a good foundation for the design and implementation of a strongly… (More)
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Highly Cited
1991
Highly Cited
1991
We investigate the interactions of subtyping and recursive types, in a simply typed λ-calculus. The two fundamental questions… (More)
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