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Biomedical text mining
Known as:
BioNLP
Biomedical text mining (also known as BioNLP) refers to text mining applied to texts and literature of the biomedical and molecular biology domain…
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13 relations
Anne O'Tate
BRENDA
BioCreative
Bioinformatics
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Broader (1)
Data mining
Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
2016
2016
VERSE: Event and Relation Extraction in the BioNLP 2016 Shared Task
Jake Lever
,
Steven J. M. Jones
Workshop on Biomedical Natural Language…
2016
Corpus ID: 15392187
We present the Vancouver Event and Relation System for Extraction (VERSE) 1 as a competing system for three subtasks of the…
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2014
2014
Ontology-based Technical Text Annotation
F. Lévy
,
Nadi Tomeh
,
Yue Ma
International Conference on Computational…
2014
Corpus ID: 18233215
Powerful tools could help users explore and maintain domain specific documentations, provided that documents have been…
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2013
2013
IRISA participation to BioNLP-ST13: lazy-learning and information retrieval for information extraction tasks
V. Claveau
2013
Corpus ID: 7180956
This paper describes the information extraction techniques developed in the framework of the participation of IRISA-TexMex to the…
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2013
2013
Towards Interoperable BioNLP Semantic Web Services Using the SADI Framework
Ahmad C. Bukhari
,
Artjom Klein
,
C. Baker
Data Integration in the Life Sciences
2013
Corpus ID: 31904962
The number of NLP and BioNLP tools published as web services grows every year. Web services do not require installation, they are…
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2012
2012
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
K. Cohen
,
Dina Demner-Fushman
,
S. Ananiadou
,
B. Webber
,
Junichi Tsujii
,
J. Pestian
2012
Corpus ID: 196023606
2012
2012
Integrating Large-Scale Text Mining and Co-Expression Networks : Targeting NADP ( H ) Metabolism in E . coli with Event Extraction
Suwisa Kaewphan
,
Sanna Kreula
,
Sofie Van Landeghem
,
Y. Peer
,
Patrik R. Jones
,
Filip Ginter
2012
Corpus ID: 17973624
We present an application of EVEX, a literature-scale event extraction resource, in the concrete biological use case of NADP(H…
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2011
2011
Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition
Yuuya Usami
,
Han-Cheol Cho
,
Naoaki Okazaki
,
Junichi Tsujii
BioNLP@ACL
2011
Corpus ID: 2055349
Named Entity Recognition (NER) is an important first step for BioNLP tasks, e.g., gene normalization and event extraction…
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2011
2011
Extracting Bacteria Biotopes with Semi-supervised Named Entity Recognition and Coreference Resolution
Nhung T. H. Nguyen
,
Yoshimasa Tsuruoka
BioNLP@ACL
2011
Corpus ID: 16451495
This paper describes our event extraction system that participated in the bacteria biotopes task in BioNLP Shared Task 2011. The…
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2011
2011
Towards Exhaustive Event Extraction for Protein Modifications
S. Pyysalo
,
Tomoko Ohta
,
Makoto Miwa
,
Junichi Tsujii
BioNLP@ACL
2011
Corpus ID: 58781598
Protein modifications, in particular post-translational modifications, have a central role in bringing about the full repertoire…
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2005
2005
Scaling Up BioNLP : Application of a Text Annotation Architecture to Noun Compound Bracketing
Preslav Nakov
,
Ariel S. Schwartz
,
Brian Wolf
,
Marti A. Hearst
2005
Corpus ID: 367609
We describe the use of the Layered Query Language and architecture to acquire statistics for natural language processing…
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