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BACKGROUND Due to the high cost of manual curation of key aspects from the scientific literature, automated methods for assisting this process are greatly desired. Here, we report a novel approach to facilitate MeSH indexing, a challenging task of assigning MeSH terms to MEDLINE citations for their archiving and retrieval. METHODS Unlike previous methods(More)
This article reports on a detailed investigation of PubMed users' needs and behavior as a step toward improving biomedical information retrieval. PubMed is providing free service to researchers with access to more than 19 million citations for biomedical articles from MEDLINE and life science journals. It is accessed by millions of users each day. Efficient(More)
Information processing algorithms require significant amounts of annotated data for training and testing. The availability of such data is often hindered by the complexity and high cost of production. In this paper, we investigate the benefits of a state-of-the-art tool to help with the semantic annotation of a large set of biomedical queries. Seven(More)
The profusion of online resources calls for tools and methods to help Internet users find precisely what they are looking for. Quality controlled gateway CISMeF provides such services for health resources. However, the human cost of maintaining and updating the catalogue are increasingly high. This paper presents the automatic indexing system currently(More)
This paper reports on Task 1b of the 2015 CLEF eHealth evaluation lab which extended the previous information extraction tasks of ShARe/CLEF eHealth evaluation labs by considering ten types of entities including disorders, that were to be extracted from biomedical text in French. The task consisted of two phases: entity recognition (phase 1), in which(More)
The biomedical domain offers a wealth of linguistic resources for Natural Language Processing, including terminologies and corpora. While many of these resources are prominently available for English, other languages including French benefit from substantial coverage thanks to the contribution of an active community over the past decades. However, access to(More)
The volume of biomedical literature has experienced explosive growth in recent years. This is reflected in the corresponding increase in the size of MEDLINE, the largest bibliographic database of biomedical citations. Indexers at the US National Library of Medicine (NLM) need efficient tools to help them accommodate the ensuing workload. After reviewing(More)
This paper reports on the 3rd CLEFeHealth evaluation lab, which continues our evaluation resource building activities for the medical domain. In this edition of the lab, we focus on easing patients and nurses in authoring, understanding, and accessing eHealth information. The 2015 CLEFeHealth evaluation lab was structured into two tasks, fo-cusing on(More)
The number of articles in the MEDLINE database is expected to increase tremendously in the coming years. To ensure that all these documents are indexed with continuing high quality, it is necessary to develop tools and methods that help the indexers in their daily task. We present three methods addressing a novel aspect of automatic indexing of the(More)
BACKGROUND To assist with the development of a French online quality-controlled health gateway(CISMeF), an automatic indexing tool assigning MeSH descriptors to medical text in French was created. The French Multi-Terminology Indexer (FMTI) relies on a multi-terminology approach involving four prominent medical terminologies and the mappings between them.(More)