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YYDPETGTWY
Known as:
CLN025
National Institutes of Health
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Related topics
Related topics
1 relation
Broader (1)
Oligopeptides
Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
2019
2019
General Purpose Water Model Can Improve Atomistic Simulations of Intrinsically Disordered Proteins.
P. Shabane
,
S. Izadi
,
A. Onufriev
Journal of chemical theory and computation
2019
Corpus ID: 76667238
Unconstrained atomistic simulations of intrinsically disordered proteins and peptides (IDP) remain a challenge: widely used…
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2017
2017
Modeling the mechanism of CLN025 beta-hairpin formation.
K. McKiernan
,
B. Husic
,
V. Pande
The Journal of chemical physics
2017
Corpus ID: 13371491
Beta-hairpins are substructures found in proteins that can lend insight into more complex systems. Furthermore, the folding of…
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2017
2017
Validation of Molecular Dynamics Simulations for Prediction of Three-Dimensional Structures of Small Proteins
Koichi Kato
,
T. Nakayoshi
,
S. Fukuyoshi
,
E. Kurimoto
,
A. Oda
Molecules
2017
Corpus ID: 36666446
Although various higher-order protein structure prediction methods have been developed, almost all of them were developed based…
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2015
2015
Recovering Protein Thermal Stability Using All-Atom Hamiltonian Replica-Exchange Simulations in Explicit Solvent.
Guillaume Stirnemann
,
F. Sterpone
Journal of chemical theory and computation
2015
Corpus ID: 38101181
The REST2 method is successfully applied to investigate the thermal stability of chignolin CLN025 and of Trp-cage. As opposed to…
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2014
2014
Low-mass molecular dynamics simulation: a simple and generic technique to enhance configurational sampling.
Y. Pang
Biochemical and biophysical research…
2014
Corpus ID: 41483604
2013
2013
Dynamics of an ultrafast folding subdomain in the context of a larger protein fold.
Caitlin M Davis
,
R. B. Dyer
Journal of the American Chemical Society
2013
Corpus ID: 21350569
Small fast folding subdomains with low contact order have been postulated to facilitate the folding of larger proteins. We have…
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2012
2012
Raising the speed limit for β-hairpin formation.
Caitlin M Davis
,
Shifeng Xiao
,
D. Raleigh
,
R. B. Dyer
Journal of the American Chemical Society
2012
Corpus ID: 8795347
Understanding the folding of the β-hairpin is a crucial step in studying how β-rich proteins fold. We have studied CLN025, an…
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2011
2011
Molecular dynamics simulation exploration of unfolding and refolding of a ten-amino acid miniprotein
G. Zhao
,
Changrui Cheng
Amino Acids
2011
Corpus ID: 18331653
Steered molecular dynamics simulations are performed to explore the unfolding and refolding processes of CLN025, a 10-residue…
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2010
2010
Molecular dynamics analysis of the conformations of a beta-hairpin miniprotein.
M. P. Hatfield
,
R. Murphy
,
S. Lovas
The journal of physical chemistry. B
2010
Corpus ID: 24856926
Molecular dynamics simulations of a beta-hairpin miniprotein, CLN025, were performed to examine the conformational stability of…
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2010
2010
Characterizing protein energy landscape by self-learning multiscale simulations: application to a designed β-hairpin.
Wenfei Li
,
S. Takada
Biophysical journal
2010
Corpus ID: 206295903
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