A Verlet list (named after Loup Verlet) is a data structure in molecular dynamics simulations to efficiently maintain a list of all particles withinâ€¦Â (More)

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2018

2018

- Chenglong Zhang, Mingcan Zhao, Chaofeng Hou, Wei Ge
- Computer Physics Communications
- 2018

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Review

2012

Review

2012

- Tyson J. Lipscomb, Anqi Zou, Samuel S. Cho
- BCB
- 2012

Understanding protein and RNA biomolecular folding and assembly processes have important applications because misfolding isâ€¦Â (More)

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2012

2012

- Pedro Gonnet
- Journal of Computational Chemistry
- 2012

Verlet lists, which are commonly used in many particle-based simulations, are not suited for modern, shared-memory parallelâ€¦Â (More)

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2010

2010

- Sergei Grudinin, StÃ©phane Redon
- Journal of Computational Chemistry
- 2010

A new method for efficient modeling of macromolecular systems with symmetries is presented. The method is based on a hierarchicalâ€¦Â (More)

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2010

2010

- Kwanghun Han, Seungmin Woo, Duho Kang, Sunghyun Choi
- 2010 Second International Conference onâ€¦
- 2010

We propose an automatic generation scheme of neighboring BS (Base Station) lists, utilized by an MS (Mobile Station) to determineâ€¦Â (More)

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2006

2006

- Doru Calin
- IEEE Globecom 2006
- 2006

The paper presents the concept of an adaptive neighbor list management mechanism that has as objective to control the quality ofâ€¦Â (More)

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2004

2004

Aleksandar Donev, 2 Salvatore Torquato, 2, 3, âˆ— and Frank H. Stillinger Program in Applied and Computational Mathematicsâ€¦Â (More)

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2004

2004

- Zhenhua Yao, Jian-Sheng Wang, Gui-Rong Liu, Min Cheng
- Computer Physics Communications
- 2004

An improved neighbor list algorithm is proposed to reduce unnecessary interatomic distance calculations in molecular simulationsâ€¦Â (More)

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2004

2004

We apply the algorithm presented in the first part of this series of papers to systems of hard ellipses and ellipsoids. Theâ€¦Â (More)

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1994

1994

- Hans-Peter Lenhof, Michiel H. M. Smid
- Symposium on Computational Geometry
- 1994

This video shows an animation of an algorithm due to the authors [2] for solving the fixed-radius all-nearest-neighbors problemâ€¦Â (More)

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