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T-Coffee

T-Coffee (Tree-based Consistency Objective Function For alignment Evaluation) is a multiple sequence alignment software using a progressive approach… (More)
Wikipedia

Topic mentions per year

Topic mentions per year

1996-2017
051019962017

Related topics

Related topics

18 relations

Broader (2)

BioinformaticsComputational phylogenetics
BiskitClustalW/ClustalXFASTAFASTA format
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Related mentions per year

Related mentions per year

1959-2018
1960198020002020
T-Coffee
Bioinformatics
Sequence alignment
Sequence analysis
Multiple sequence alignment
Protein Data Bank

Papers overview

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Highly Cited
2012
Highly Cited
2012
Comparison of Phylogenetic Trees of Multiple Protein Sequence Alignment Methods
Multiple sequence alignment is a fundamental part in many bioinformatics applications such as phylogenetic analysis. Many… (More)
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2012
2012
Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
Transmembrane proteins (TMPs) constitute about 20~30% of all protein coding genes. The relative lack of experimental structure… (More)
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Highly Cited
2011
Highly Cited
2011
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
This article introduces a new interface for T-Coffee, a consistency-based multiple sequence alignment program. This interface… (More)
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2010
2010
A user-friendly web portal for T-Coffee on supercomputers
Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on… (More)
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Highly Cited
2010
Highly Cited
2010
A new bioinformatics analysis tools framework at EMBL–EBI
The EMBL-EBI provides access to various mainstream sequence analysis applications. These include sequence similarity search… (More)
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2010
2010
Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud
SUMMARY We present the first parallel implementation of the T-Coffee consistency-based multiple aligner. We benchmark it on the… (More)
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2008
2008
R-Coffee: a web server for accurately aligning noncoding RNA sequences
The R-Coffee web server produces highly accurate multiple alignments of noncoding RNA (ncRNA) sequences, taking into account… (More)
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Highly Cited
2007
Highly Cited
2007
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods
The M-Coffee server is a web server that makes it possible to compute multiple sequence alignments (MSAs) by running several MSA… (More)
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2004
2004
MUSCLE: Low-complexity multiple sequence alignment with T-Coffee accuracy
MUSCLE ALGORITHM ABSTRACT We describe MUSCLE, a new program for creating multiple alignments of protein sequences. MUSCLE… (More)
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Highly Cited
2003
Highly Cited
2003
PCMA: fast and accurate multiple sequence alignment based on profile consistency
UNLABELLED PCMA (profile consistency multiple sequence alignment) is a progressive multiple sequence alignment program that… (More)
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