T-Coffee

T-Coffee (Tree-based Consistency Objective Function For alignment Evaluation) is a multiple sequence alignment software using a progressive approach… (More)
Wikipedia

Topic mentions per year

Topic mentions per year

1996-2017
051019962017

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
Highly Cited
2012
Highly Cited
2012
Multiple sequence alignment is a fundamental part in many bioinformatics applications such as phylogenetic analysis. Many… (More)
  • table I
  • table III
  • table IV
  • table V
  • table VI
Is this relevant?
2012
2012
Transmembrane proteins (TMPs) constitute about 20~30% of all protein coding genes. The relative lack of experimental structure… (More)
Is this relevant?
Highly Cited
2011
Highly Cited
2011
This article introduces a new interface for T-Coffee, a consistency-based multiple sequence alignment program. This interface… (More)
  • figure 1
Is this relevant?
2010
2010
Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on… (More)
  • figure 1
  • figure 2
  • table 1
  • figure 3
Is this relevant?
Highly Cited
2010
Highly Cited
2010
The EMBL-EBI provides access to various mainstream sequence analysis applications. These include sequence similarity search… (More)
Is this relevant?
2010
2010
SUMMARY We present the first parallel implementation of the T-Coffee consistency-based multiple aligner. We benchmark it on the… (More)
  • table 1
Is this relevant?
2008
2008
The R-Coffee web server produces highly accurate multiple alignments of noncoding RNA (ncRNA) sequences, taking into account… (More)
  • figure 1
  • figure 2
Is this relevant?
Highly Cited
2007
Highly Cited
2007
The M-Coffee server is a web server that makes it possible to compute multiple sequence alignments (MSAs) by running several MSA… (More)
  • figure 1
  • figure 2
Is this relevant?
2004
2004
MUSCLE ALGORITHM ABSTRACT We describe MUSCLE, a new program for creating multiple alignments of protein sequences. MUSCLE… (More)
  • table 1
Is this relevant?
Highly Cited
2003
Highly Cited
2003
UNLABELLED PCMA (profile consistency multiple sequence alignment) is a progressive multiple sequence alignment program that… (More)
  • table 1
Is this relevant?