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String graph

Known as: String 
In graph theory, a string graph is an intersection graph of curves in the plane; each curve is called a "string". Given a graph G, G is a string… 
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Papers overview

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2019
2019
Converting a set of sequencing reads into a lossless compact data structure that encodes all the relevant biological information… 
2019
2019
In contrast to genome assemblers that use de Bruijn graphs, those based on string graphs are able to losslessly retain… 
2018
2018
A \emph{$k$-bend path} is a rectilinear curve made up of $k + 1$ line segments. A \emph{$B_k$-VPG representation} of a graph is a… 
2018
2018
Motivation: The third generation PacBio long reads have greatly facilitated sequencing projects with very large read lengths, but… 
2017
2017
This report summarizes Dagstuhl Seminar 16452 “Beyond-Planar Graphs: Algorithmics and Combinatorics” and documents the talks and… 
2014
2014
In this paper we present an efficient external memory algorithm to compute the string graph from a collection of reads, which is… 
2013
2013
Localising and aligning objects is a challenging task in computer vision that still remains largely unsolved. Utilising the… 
2010
2010
The growing self-organizing map (GSOM) is a variation of the popular self-organizing map (SOM). It was developed to address the… 
2007
2007
Abstract This paper introduces QuanTree v1.1 and QuanLin v1.1, two Java applications avail-able for free. (Source code included…