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SBML

Known as: Systems biology markup language 
The Systems Biology Markup Language (SBML) is a representation format, based on XML, for communicating and storing computational models of biological… 
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BioModels DatabaseBioPAXBioTapestryC++

Broader (1)

Systems biology

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2015
2015
Extracting reproducible simulation studies from model repositories using the combinearchive toolkit
The COMBINE archive is a digital container format for files related to a virtual experiment in computational biology. It eases… 
2009
2009
Reconstruction of an in silico metabolic model of Arabidopsis thaliana through database integration
The number of genome-scale metabolic models has been rising quickly in recent years, and the scope of their utilization… 
2009
2009
CELL BIOLOGY SIMULATION USING DEVS COMBINED WITH SBML
Computational cell biology is a relatively new branch of computational sciences which sets computer simulation, as well as… 
2009
2009
Athena: Modular CAM/CAD Software for Synthetic Biology
Synthetic biology is the engineering of cellular networks. It combines principles of engineering and the knowledge of biological… 
2007
2007
Signal Transduction Pathways as Concurrent Reactive Systems: A Modeling and Simulation Approach Using LSCs and the Play-Engine
Review
2006
Review
2006
Human Immune System Simulation: A Survey of Current Approaches
Human immune system simulation can serve several purposes. Medical researchers can use immune system simulation in drug research… 
2006
2006
From Syntax to Semantics in Systems Biology Towards Automated Reasoning Tools
  • F. Fages
  • Trans. Comp. Sys. Biology
  • 2006
  • Corpus ID: 740483
Mathematical biology has for a long time investigated the dynamics of biomolecular systems by developing numerical models… 
Review
2006
Review
2006
The VANTED software system for transcriptomics, proteomics and metabolomics analysis
Current research in biology generates data sets of increasing size that are very difficult to manage and analyze manually… 
2006
2006
Databases for systems biology
2005
2005
A Multi-agent System for Modelling Carbohydrate Oxidation in Cell
A cell consists of a large number of components interacting in a dynamic environment. The complexity of interaction among cell… 
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