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BioPAX

Known as: SBPAX 
BioPAX (Biological Pathway Exchange) is a RDF/OWL-basedstandard language to represent biological pathwaysat the molecular and cellular level. Its… 
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Related topics

Related topics

24 relations
BioModels DatabaseCOMBINEConsensusPathDBFlux balance analysis

Broader (2)

BioinformaticsSystems biology

Papers overview

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Highly Cited
2017
Highly Cited
2017
Biomedical Event Extraction using Abstract Meaning Representation
We propose a novel, Abstract Meaning Representation (AMR) based approach to identifying molecular events/interactions in… 
2013
2013
Building Executable Biological Pathway Models Automatically from BioPAX
The amount of biological data exposed in semantic formats is steadily increasing. In particular, pathway information (a model of… 
Review
2013
Review
2013
In Silico Systems Biology
  • M. Schneider
  • Methods in Molecular Biology
  • 2013
  • Corpus ID: 3690704
Here we provide a broad overview of the definition of the term “systems biology” as well as pinpoint specific events in… 
2011
2011
MPath2PN - Translating metabolic pathways into Petri nets
We propose MPath2PN, a tool which automatically trans- lates metabolic pathways, as described in the major biological databases… 
2006
2006
A semantic web approach to biological pathway data reasoning and integration
2006
2006
BioPAX – biological pathway data exchange format
Pathway information is vital for successful modeling of cellular systems. The over 215 on-line pathway databases vary widely in… 
2006
2006
Genea: Schema-Aware Mapping of Ontologies into Relational Databases
Ontologies have become an important mechanism for describing and exchanging data in the semantic web, as well as in application… 
Highly Cited
2005
Highly Cited
2005
BioPAX - Biological Pathways Exchange Language Level 2, Version 1.0 Documentation
At present, there are over 215 Internet-accessible databases that store biological pathway data. Biologists often need to use… 
2005
2005
An XML-based Database of Molecular Pathways
Research of protein-protein interactions produce vast quantities of data and there exists a large number of databases with data… 
2004
2004
XML representations of pathway data : a comparison
Standardisation and integration of pathway data is currently an interesting topic within bioinformatics with several consortia,e… 
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