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BioPAX
Known as:
SBPAX
BioPAX (Biological Pathway Exchange) is a RDF/OWL-basedstandard language to represent biological pathwaysat the molecular and cellular level. Its…
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Related topics
Related topics
24 relations
BioModels Database
COMBINE
ConsensusPathDB
Flux balance analysis
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Broader (2)
Bioinformatics
Systems biology
Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
Highly Cited
2017
Highly Cited
2017
Biomedical Event Extraction using Abstract Meaning Representation
Sudha Rao
,
D. Marcu
,
Kevin Knight
,
Hal Daumé
Workshop on Biomedical Natural Language…
2017
Corpus ID: 9961954
We propose a novel, Abstract Meaning Representation (AMR) based approach to identifying molecular events/interactions in…
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2013
2013
Building Executable Biological Pathway Models Automatically from BioPAX
T. Willemsen
,
K. Feenstra
,
Paul T. Groth
LISC@ISWC
2013
Corpus ID: 6742289
The amount of biological data exposed in semantic formats is steadily increasing. In particular, pathway information (a model of…
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Review
2013
Review
2013
In Silico Systems Biology
M. Schneider
Methods in Molecular Biology
2013
Corpus ID: 3690704
Here we provide a broad overview of the definition of the term “systems biology” as well as pinpoint specific events in…
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2011
2011
MPath2PN - Translating metabolic pathways into Petri nets
Paolo Baldan
,
N. Cocco
,
F. D. Nes
,
M. L. Segura
,
A. Marin
,
Marta Simeoni
2011
Corpus ID: 9813330
We propose MPath2PN, a tool which automatically trans- lates metabolic pathways, as described in the major biological databases…
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2006
2006
A semantic web approach to biological pathway data reasoning and integration
K. Cheung
,
Peishen Qi
,
D. Tuck
,
M. Krauthammer
Journal of Web Semantics
2006
Corpus ID: 15846015
2006
2006
BioPAX – biological pathway data exchange format
Gary D Bader
,
Michael P. Cary
,
C. Sander
2006
Corpus ID: 54096284
Pathway information is vital for successful modeling of cellular systems. The over 215 on-line pathway databases vary widely in…
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2006
2006
Genea: Schema-Aware Mapping of Ontologies into Relational Databases
Tim Kraska
,
Uwe Röhm
International Conference on Management of Data
2006
Corpus ID: 15778531
Ontologies have become an important mechanism for describing and exchanging data in the semantic web, as well as in application…
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Highly Cited
2005
Highly Cited
2005
BioPAX - Biological Pathways Exchange Language Level 2, Version 1.0 Documentation
Gary D Bader
,
E. Brauner
,
+31 authors
Jeremy D. Zucker
2005
Corpus ID: 62726634
At present, there are over 215 Internet-accessible databases that store biological pathway data. Biologists often need to use…
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2005
2005
An XML-based Database of Molecular Pathways
D. Hall
2005
Corpus ID: 59651740
Research of protein-protein interactions produce vast quantities of data and there exists a large number of databases with data…
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2004
2004
XML representations of pathway data : a comparison
L. Strömbäck
2004
Corpus ID: 10230508
Standardisation and integration of pathway data is currently an interesting topic within bioinformatics with several consortia,e…
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