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BioPAX

Known as: SBPAX 
BioPAX (Biological Pathway Exchange) is a RDF/OWL-basedstandard language to represent biological pathwaysat the molecular and cellular level. Its… Expand
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Related topics

Related topics

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BioModels DatabaseCOMBINEConsensusPathDBFlux balance analysis
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Broader (2)

BioinformaticsSystems biology

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2017
2017
Biomedical Event Extraction using Abstract Meaning Representation
We propose a novel, Abstract Meaning Representation (AMR) based approach to identifying molecular events/interactions in… Expand
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2013
2013
Building Executable Biological Pathway Models Automatically from BioPAX
The amount of biological data exposed in semantic formats is steadily increasing. In particular, pathway information (a model of… Expand
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2008
2008
Pathway knowledge base: An integrated pathway resource using BioPAX
The role of proteins and their function in pathways is crucial to understanding complex biological processes and their failures… Expand
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2007
2007
Hey! You Got Imperative in My Declarative, or A Mashup Made in Heaven: Making OWL friendlier with Javascript
A fluid control system for cleaning exhaust gases of an internal combustion engine by injecting additional air into the exhaust… Expand
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2006
2006
BioPAX – biological pathway data exchange format
Pathway information is vital for successful modeling of cellular systems. The over 215 on-line pathway databases vary widely in… Expand
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2006
2006
Genea: Schema-Aware Mapping of Ontologies into Relational Databases
Ontologies have become an important mechanism for describing and exchanging data in the semantic web, as well as in application… Expand
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2006
2006
What BioPAX Communicates and how to extend OWL to help it
BioPAX[1] is a collaborative effort to develop a data exchange format to facilitate integration of biological pathway knowledge… Expand
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Highly Cited
2005
Highly Cited
2005
BioPAX - Biological Pathways Exchange Language Level 2, Version 1.0 Documentation
At present, there are over 215 Internet-accessible databases that store biological pathway data. Biologists often need to use… Expand
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2005
2005
An XML-based Database of Molecular Pathways
Research of protein-protein interactions produce vast quantities of data and there exists a large number of databases with data… Expand
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2004
2004
XML representations of pathway data : a comparison
Standardisation and integration of pathway data is currently an interesting topic within bioinformatics with several consortia,e… Expand
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