BioPAX

Known as: SBPAX 
BioPAX (Biological Pathway Exchange) is a RDF/OWL-basedstandard language to represent biological pathwaysat the molecular and cellular level. Its… (More)
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BioModels DatabaseCOMBINEConsensusPathDBFlux balance analysis
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Broader (2)

BioinformaticsSystems biology

Papers overview

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2014
2014
Pattern search in BioPAX models
MOTIVATION BioPAX is a standard language for representing complex cellular processes, including metabolic networks, signal… (More)
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2013
2013
rBiopaxParser - an R package to parse, modify and visualize BioPAX data
MOTIVATION Biological pathway data, stored in structured databases, is a useful source of knowledge for a wide range of… (More)
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Highly Cited
2012
Highly Cited
2012
PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse
PhosphoSitePlus (http://www.phosphosite.org) is an open, comprehensive, manually curated and interactive resource for studying… (More)
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2012
2012
Qualitative translation of relations from BioPAX to SBML qual
MOTIVATION The biological pathway exchange language (BioPAX) and the systems biology markup language (SBML) belong to the most… (More)
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2011
2011
BioPAX support in CellDesigner
MOTIVATION BioPAX is a standard language for representing and exchanging models of biological processes at the molecular and… (More)
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2009
2009
Integrating BioPAX knowledge with SBML models
Online databases store thousands of molecular interactions and pathways, and numerous modeling software tools provide users with… (More)
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2007
2007
Kinetic Modeling Using BioPAX Ontology
Thousands of biochemical interactions are available for download from curated databases such as Reactome, Pathway Interaction… (More)
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2006
2006
What BioPAX Communicates and how to extend OWL to help it
BioPAX[1] is a collaborative effort to develop a data exchange format to facilitate integration of biological pathway knowledge… (More)
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2006
2006
Data Integration with BioPAX Pathway Datasets for Automated Navigation
The emergence of biological pathway datasets in BioPAX format provides a standard way to exchange pathway datasets and new ways… (More)
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Highly Cited
2005
Highly Cited
2005
Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX
MOTIVATION Analysis and simulation of pathway data is of high importance in bioinformatics. Standards for representation of… (More)
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