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BioPAX
Known as:
SBPAX
BioPAX (Biological Pathway Exchange) is a RDF/OWL-basedstandard language to represent biological pathwaysat the molecular and cellular level. Its…
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24 relations
BioModels Database
COMBINE
ConsensusPathDB
Flux balance analysis
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Broader (2)
Bioinformatics
Systems biology
Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
2013
2013
Building Executable Biological Pathway Models Automatically from BioPAX
T. Willemsen
,
K. Feenstra
,
Paul T. Groth
LISC@ISWC
2013
Corpus ID: 6742289
The amount of biological data exposed in semantic formats is steadily increasing. In particular, pathway information (a model of…
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2010
2010
Java DOM Parsers to Convert KGML into SBML and BioPAX Common Exchange Formats
Kyung-Eun Lee
,
Myungha Jang
,
A. Rhie
,
C. Thong
,
San-Duk Yang
,
Hyun-Seok Park
2010
Corpus ID: 19479653
Integrating various pathway data collections to create new biological knowledge is a challenge, for which novel computational…
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2008
2008
Pathway knowledge base: An integrated pathway resource using BioPAX
N. Kotecha
,
K. Bruck
,
William Lu
,
N. Shah
Appl. Ontology
2008
Corpus ID: 21942358
The role of proteins and their function in pathways is crucial to understanding complex biological processes and their failures…
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2008
2008
Pathway knowledge base: An integrated pathway resource using BioPAX
KotechaNikesh
,
BruckKyle
,
LuWilliam
,
ShahNigam
2008
Corpus ID: 215961537
The role of proteins and their function in pathways is crucial to understanding complex biological processes and their failures…
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2007
2007
BIOPAX REPORT SPRING 2007
C. Sander
2007
Corpus ID: 63131140
In July 2004, the Department of Energy (DOE) allocated funds in support of the development of A Data Exchange Format for…
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2007
2007
Hey! You Got Imperative in My Declarative, or A Mashup Made in Heaven: Making OWL friendlier with Javascript
A. Ruttenberg
OWL: Experiences and Directions
2007
Corpus ID: 1661246
A fluid control system for cleaning exhaust gases of an internal combustion engine by injecting additional air into the exhaust…
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2006
2006
A semantic web approach to biological pathway data reasoning and integration
K. Cheung
,
Peishen Qi
,
D. Tuck
,
M. Krauthammer
Journal of Web Semantics
2006
Corpus ID: 15846015
2006
2006
What BioPAX Communicates and how to extend OWL to help it
A. Ruttenberg
,
Jonathan Rees
,
Jeremy D. Zucker
OWL: Experiences and Directions
2006
Corpus ID: 10160625
BioPAX[1] is a collaborative effort to develop a data exchange format to facilitate integration of biological pathway knowledge…
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2005
2005
BioPAX - Biological Pathways Exchange Language Level 2, Version 1.0 Documentation
Gary D Bader
,
E. Brauner
,
+31 authors
Jeremy D. Zucker
2005
Corpus ID: 62726634
At present, there are over 215 Internet-accessible databases that store biological pathway data. Biologists often need to use…
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2004
2004
XML representations of pathway data : a comparison
L. Strömbäck
2004
Corpus ID: 10230508
Standardisation and integration of pathway data is currently an interesting topic within bioinformatics with several consortia,e…
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