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BioPAX

Known as: SBPAX 
BioPAX (Biological Pathway Exchange) is a RDF/OWL-basedstandard language to represent biological pathwaysat the molecular and cellular level. Its… 
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Related topics

Related topics

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BioModels DatabaseCOMBINEConsensusPathDBFlux balance analysis
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Broader (2)

BioinformaticsSystems biology

Papers overview

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Highly Cited
2017
Highly Cited
2017
Biomedical Event Extraction using Abstract Meaning Representation
We propose a novel, Abstract Meaning Representation (AMR) based approach to identifying molecular events/interactions in… 
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Review
2013
Review
2013
In Silico Systems Biology
  • M. Schneider
  • Methods in Molecular Biology
  • 2013
  • Corpus ID: 3690704
Here we provide a broad overview of the definition of the term “systems biology” as well as pinpoint specific events in… 
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2012
2012
Integration of Metabolic Pathway Linked Data : Lessons Learned
In the last few years, the Life Science domain has experienced a rapid growth in the amount of available biological databases… 
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2011
2011
MPath2PN - Translating metabolic pathways into Petri nets
We propose MPath2PN, a tool which automatically trans- lates metabolic pathways, as described in the major biological databases… 
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2008
2008
Pathway knowledge base: An integrated pathway resource using BioPAX
The role of proteins and their function in pathways is crucial to understanding complex biological processes and their failures… 
2007
2007
BIOPAX REPORT SPRING 2007
In July 2004, the Department of Energy (DOE) allocated funds in support of the development of A Data Exchange Format for… 
2006
2006
Genea: Schema-Aware Mapping of Ontologies into Relational Databases
Ontologies have become an important mechanism for describing and exchanging data in the semantic web, as well as in application… 
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2006
2006
BioPAX – biological pathway data exchange format
Pathway information is vital for successful modeling of cellular systems. The over 215 on-line pathway databases vary widely in… 
Highly Cited
2005
Highly Cited
2005
BioPAX - Biological Pathways Exchange Language Level 2, Version 1.0 Documentation
At present, there are over 215 Internet-accessible databases that store biological pathway data. Biologists often need to use… 
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2004
2004
XML representations of pathway data : a comparison
Standardisation and integration of pathway data is currently an interesting topic within bioinformatics with several consortia,e… 
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