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BioPAX
Known as:
SBPAX
BioPAX (Biological Pathway Exchange) is a RDF/OWL-basedstandard language to represent biological pathwaysat the molecular and cellular level. Its…
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24 relations
BioModels Database
COMBINE
ConsensusPathDB
Flux balance analysis
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Broader (2)
Bioinformatics
Systems biology
Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
2018
2018
A New Database for Drug Discovery Through Application of Data-Integration and Semantics
Ole Kristian Ekseth
,
J. Meyer
,
S. Hvasshovd
International Computer Science Conference
2018
Corpus ID: 4860929
Biomedical databases are important in drug- discovery. Example applications are: disease-treatments, investi- gating side-effects…
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2013
2013
Looking into Reactome through Biopax Lens
Laleh Kazemzadeh
,
Helena F. Deus
,
M. Dumontier
,
F. Barry
China Semantic Web Symposium
2013
Corpus ID: 8382619
In order to understand cell behavior under different conditions, the computational simulation of biological pathways is of great…
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2013
2013
Building Executable Biological Pathway Models Automatically from BioPAX
T. Willemsen
,
K. Feenstra
,
Paul T. Groth
LISC@ISWC
2013
Corpus ID: 6742289
The amount of biological data exposed in semantic formats is steadily increasing. In particular, pathway information (a model of…
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2013
2013
Pattern search in BioPAX models ¨ Ozg¨
I. Rodchenkov
,
C. Sander
,
E. Demir
2013
Corpus ID: 63569799
Motivation: BioPAX is a standard language for representing complex cellular processes, including metabolic networks, signal…
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Review
2013
Review
2013
HINO: BFO-aligned ontology representation of human molecular interactions and pathways
Zuoshuang Xiang
,
Y. He
International Conference on Biomedical Ontology
2013
Corpus ID: 8136930
Reactome is a manually-curated, peer-reviewed knowledgebase of human pathways and processes. As a standard pathway data exchange…
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2008
2008
Problems and Solutions in the Integration of biomedical knowledge bases
Luca Corradi
,
M. Fato
,
+5 authors
A. Schenone
2008
Corpus ID: 16202220
The problem of integrating different biomedical knowledge bases has to face lots of problems than are even more difficult in the…
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Review
2008
Review
2008
OWL: PAX of Mind or the AX that Caused the Split?
Joanne S. Luciano
,
Robert Stevens
OWL: Experiences and Directions
2008
Corpus ID: 10187458
This paper argues that several factors conspired to produce a less than optimal OWL version of BioPAX, describes what those…
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2007
2007
Hey! You Got Imperative in My Declarative, or A Mashup Made in Heaven: Making OWL friendlier with Javascript
A. Ruttenberg
OWL: Experiences and Directions
2007
Corpus ID: 1661246
A fluid control system for cleaning exhaust gases of an internal combustion engine by injecting additional air into the exhaust…
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2006
2006
Data Integration with BioPAX Pathway Datasets for Automated Navigation
Keyuan Jiang
International Conference on Bioinformatics…
2006
Corpus ID: 16320266
The emergence of biological pathway datasets in BioPAX format provides a standard way to exchange pathway datasets and new ways…
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2003
2003
Sixth Annual Bio-ontologies Meeting Brisbane, 2003 Contents 1 Programme 5 2 Indexing Medline with Go 7
Robin Mcentire
2003
Corpus ID: 15483280