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RegulonDB

Most of the times, regulatory elements occur upstream of operons. However, there is a good number of regulatory elements (promoter and binding sites… 
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DNA binding siteSystems biology

Papers overview

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2018
2018
Prediction of Escherichia Coli K-12 Promoters Using Convolutional Neural Network
Promoters are significant cis-acting elements in genomes and play important roles in gene regulation. Each gene is regulated by a… 
2017
2017
A new and integrative curation system for RegulonDB
2016
2016
Strategies towards digital and semi-automated curation in RegulonDB
2011
2011
Conceptual model of E. coli transcriptional machinery
References: 1. Freyre-González et al. Functional architecture of Escherichia coli: new insights provided by a natural… 
2008
2008
Anàlisi bioinformàtica de seqüències reguladores de l'expressió gènica en eucariotes.
El treball realitzat durant el meu doctorat ha estat dirigit a entendre millor l'organitzacio i l'evolucio de les regions de DNA… 
2008
2008
The determinants of transcriptional network motifs assembly in Escherichia coli
We assembled a transcriptional regulatory network (TRN) wit h data fromEscherichia coli ’s RegulonDB (v.5.6) [1]. In this network… 
2008
2008
An integrated analysis of the metabolic and regulatory networks of escherichia coli K12
Results: The overall network integrates data from publicly available repositories, namely EcoCyc, BRENDA and RegulonDB, and… 
2004
2004
BClass: A Bayesian Approach Based on Mixture Models for Clustering and Classification of Heterogeneous Biological Data
Based on mixture models, we present a Bayesian method (called BClass) to classify biological entities (e.g. genes) when variables…