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RegulonDB

Most of the times, regulatory elements occur upstream of operons. However, there is a good number of regulatory elements (promoter and binding sites… 
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2 relations
DNA binding siteSystems biology

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2018
2018
Prediction of Escherichia Coli K-12 Promoters Using Convolutional Neural Network
Promoters are significant cis-acting elements in genomes and play important roles in gene regulation. Each gene is regulated by a… 
2017
2017
A genetic screen suggests an alternative mechanism for inhibition of SecA by azide
A high-density transposon library constructed in BW25113 was grown in the absence or presence of 0.25 mM or 0.5 mM sodium azide… 
2016
2016
Strategies towards digital and semi-automated curation in RegulonDB
Review
2015
Review
2015
Bioinformatics Methods for Biochemical Pathways and System Biology Analysis
The analysis of biochemical pathways and system biology has gained significance because of their role in understanding disease… 
2011
2011
Generating Semantics for the Life Sciences via Text Analytics
  • E. BuykoU. Hahn
  • IEEE Fifth International Conference on Semantic…
  • 2011
  • Corpus ID: 17581742
The life sciences have a strong need for carefully curated, semantically rich fact repositories. Knowledge harvesting from… 
2010
2010
Information on Transcriptional Regulation and Signal Transduction of Escherichia coli K-12 Integrated in the Database RegulonDB.
Since its inception, RegulonDB (http://regulondb.ccg.unam.mx/) has been a database that compiles information about the regulation… 
2008
2008
Anàlisi bioinformàtica de seqüències reguladores de l'expressió gènica en eucariotes.
El treball realitzat durant el meu doctorat ha estat dirigit a entendre millor l'organitzacio i l'evolucio de les regions de DNA… 
2008
2008
The determinants of transcriptional network motifs assembly in Escherichia coli
We assembled a transcriptional regulatory network (TRN) wit h data fromEscherichia coli ’s RegulonDB (v.5.6) [1]. In this network… 
2004
2004
BClass: A Bayesian Approach Based on Mixture Models for Clustering and Classification of Heterogeneous Biological Data
Based on mixture models, we present a Bayesian method (called BClass) to classify biological entities (e.g. genes) when variables… 
2002
2002
Database of Operons in Bacillus subtilis
The operon, a unit of transcription in prokaryotes, comprises a part of the complicated gene regulatory networks. Thus, the… 
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