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Phrap

Phrap is a widely used program for DNA sequence assembly. It is part of the Phred-Phrap-Consed package.
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Related topics

Related topics

10 relations

Broader (2)

BioinformaticsComputational science
CodonCode AlignerConsedMacVectorMetagenomics

Papers overview

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2012
2012
SAX: a new and efficient assembler for solving DNA Fragment Assembly Problem
In the past, the Fragment Assembly Problem has been solved efficiently by many metaheuristics. In this work, we propose a new one… 
2011
2011
The Genome of the Sea Urchin Strongylocentrotus purpuratus Sea Urchin Genome Sequencing Consortium
We report the sequence and analysis of the 814-megabase genome of the sea urchin Strongylocentrotus purpuratus, a model for… 
2010
2010
PMSGA: A Fast DNA Fragment Assembler
The DNA fragment assembly is an essential step in DNA sequencing projects. Since DNA sequencers output fragments, the original… 
2009
2009
Complete genome sequence of Catenulispora acidiphila type strain (ID 139908 T )
Catenulispora acidiphila Busti et al . 2006 is the type species of the genus Catenulispora , and is of interest because of the… 
2007
2007
A novel approach to high throughput microbial genome finishing: Incorporation of 454 sequence data for gap closure in low quality Sanger data
Industrial waste water, containing oil, sand and other debris, flows into the separator via a sewer line. In a first phase of… 
2007
2007
Exploitation of structural and functional genomics databases for gene identification in peach
This research aims at the development of peach as a model genome for the identification, characterization, and cloning of… 
2007
2007
Preliminary High-Throughput Metagenome Assembly
Metagenome data sets present a qualitatively different assembly problem than traditional single-organism whole-genome shotgun… 
2006
2006
On the fidelity of assembly, binning and gene calling of metagenomes using simulated datasets
Author(s): Mavrommatis, Konstantinos; Ivanova, Natalia; Barry, Kerrie; Shapiro, Harris; Goltsman, Eugene; McHardy, Alice… 
2004
2004
Current situation and countermeasure of popular science tour in China.
2000
2000
Thermodynamics of Protein Folding and Design
The protein folding and protein design problems are addressed, using coarse-grained models with only two types of amino acids… 
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