HMMER

HMMER is a free and commonly used software package for sequence analysis written by Sean Eddy. Its general usage is to identify homologous protein or… (More)
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Topic mentions per year

Topic mentions per year

1996-2016
051019962016

Papers overview

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Highly Cited
2015
Highly Cited
2015
The HMMER website, available at http://www.ebi.ac.uk/Tools/hmmer/, provides access to the protein homology search algorithms… (More)
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2012
2012
Due to the exponentially growing bioinformatics databases and rapidly popular of GPU for general purpose computing, it is… (More)
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Highly Cited
2011
Highly Cited
2011
HMMER is a software suite for protein sequence similarity searches using probabilistic methods. Previously, HMMER has mainly been… (More)
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2009
2009
In this paper we present the results of parallelizing two life sciences applications, Markov random fields-based (MRF) liver… (More)
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2009
2009
This paper describes an implementation of HMMER with FPGA. HMMER is one of the most used software tools for sensitive profile HMM… (More)
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2007
2007
HMMER, based on the profile Hidden Markov Model (HMM) is one of the most widely used sequence database searching tools, allowing… (More)
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2007
2007
Profile based Hidden Markov Model is a widely used tool in bioinformatics. While being very valuable to biologists, it is… (More)
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2006
2006
Due to the ever-increasing size of sequence databases it has become clear that faster techniques must be employed to effectively… (More)
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2003
2003
SUMMARY Although the HMMER package is widely used to produce profile hidden Markov models (profile HMMs) for protein domains, it… (More)
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1996
1996
Multiple sequence alignment of distantly related viral proteins remains a challenge to all currently available alignment methods… (More)
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