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HMMER

HMMER is a free and commonly used software package for sequence analysis written by Sean Eddy. Its general usage is to identify homologous protein or… Expand
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Papers overview

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2016
2016
Selon l'organisation mondiale de la sante, 21 pays d'Amerique Latine et notamment le Bresil sont touches par la maladie de Chagas… Expand
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Highly Cited
2010
Highly Cited
2010
Speeding up sequential programs on multicores is a challenging problem that is in urgent need of a solution. Automatic… Expand
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2009
2009
We present PIO-HMMER, an enhanced version of MPI-HMMER. PIO-HMMER improves on MPI-HMMER's scalability through the use of parallel… Expand
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2009
2009
HMMer is a widely-used bioinformatics software package that uses profile Hidden Markov Models (HMMs) to model the primary… Expand
2007
2007
Comparison between biosequences and probabilistic models is an increasingly important part of modern DNA and protein sequence… Expand
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2007
2007
Profile hidden Markov models (profile HMMs) are used as a popular bioinformatics tool for sensitive database searching, e.g. a… Expand
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Highly Cited
2006
Highly Cited
2006
Auto-Pipe is a tool that aids in the design, evaluation and implementation of applications that can be executed on computational… Expand
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2006
2006
Due to the ever-increasing size of sequence databases it has become clear that faster techniques must be employed to effectively… Expand
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Highly Cited
2005
Highly Cited
2005
The proliferation of biological sequence data has motivated the need for an extremely fast probabilistic sequence search. One… Expand
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Highly Cited
1998
Highly Cited
1998
Biological sequence analysis using profile hidden Markov models Permission is granted to make and distribute verbatim copies of… Expand