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Gap penalty

The gap penalty is a scoring system used in bioinformatics for aligning a small portion of genetic code, more accurately, fragmented genetic sequence… 
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Related topics

Related topics

10 relations
BLOSUMDynamic programmingJAlignerMultiple sequence alignment

Broader (2)

BioinformaticsComputational phylogenetics

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2019
2019
Adaptive Physical-Layer Security Through Punctured Coding for Secrecy
We propose a coding methodology for physical layer security with adaptive characteristics, whereby adaptive we mean that the… 
2016
2016
A new hybrid bio-inspired approach to resolve the multiple sequence alignment problem
Multiple sequence alignment (MSA) is one of the most important tools for analyzing information obtained from bioinformatics… 
2016
2016
A QUALITATIVE APPROACH OF ACCELERATED OPERATION ON GPU USING CUDA FOR LARGE DATABASE OPERATIONS
- GPU provides a vast number of simple, data-parallel, deeply multithreaded cores and high memory bandwidths, GPU Architecture… 
2012
2012
Tracking Genes Modifications in the Pedigree through GeneTracer Algorithm
Genes acquire many changes and modifications during evolution producing many orthologous and paralogous. One of the main… 
Review
2009
Review
2009
Learning Models for Aligning Protein Sequences with Predicted Secondary Structure
Accurately aligning distant protein sequences is notoriously difficult. A recent approach to improving alignment accuracy is to… 
2008
2008
Efficient computations of gapped string kernels based on suffix kernel
2006
2006
Protein Constellations
In this project, I applied several well-known ideas developed in the computer vision field to problems in protein structure… 
2003
2003
Alignment between Two Multiple Alignments
Alignment of two multiple alignments arises naturally when constructing approximate multiple sequence alignments progressively… 
Review
2001
Review
2001
DIVISION OF COMPUTERS IN CHEMISTRY ABSTRACTS
text not available. 52. FINGERPRINT ANALYSIS OF PROTEINS AND LIGANDS FOR HIGH-THROUGHPUT SCREENING. W. Todd Wipke, Zheng Yang… 
1997
1997
A Short Course in Computational Molecular Biology
The advent of recombinant DNA technology during the 1970s has led to an inundation of biological sequence data. The compilation… 
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