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Gap penalty

The gap penalty is a scoring system used in bioinformatics for aligning a small portion of genetic code, more accurately, fragmented genetic sequence… 
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Related topics

Related topics

10 relations
BLOSUMDynamic programmingJAlignerMultiple sequence alignment

Broader (2)

BioinformaticsComputational phylogenetics

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2014
2014
Design and docking of novel series of hybrid xanthones as anti- cancer agent to target human DNA topoisomerase 2-alpha
Topoisomerase (topo) IIα is a homodimeric protein catalyzes topological vicissitudes by adding or by soothing super coiling… 
Review
2010
Review
2010
Composition Vector Method for Phylogenetics — A Review
The composition vector (CV) method is an alignment-free method for phylogenetics. Because of its simplicity when compared with… 
2010
2010
The optimization of parallel Smith-Waterman sequence alignment using on-chip memory of GPGPU
Memory optimization is an important strategy to gain high performance for sequence alignment implemented by CUDA on GPGPU. Smith… 
Highly Cited
2009
Highly Cited
2009
A Highly Parameterized and Efficient FPGA-Based Skeleton for Pairwise Biological Sequence Alignment
This paper presents the design and implementation of the most parameterisable field-programmable gate array (FPGA)-based skeleton… 
2007
2007
High Performance Biosequence Database Scanning using FPGAs
This paper presents the design and implementation of a generic and highly parameterised FPGA-based core for pairwise biological… 
2007
2007
Dynamic programming algorithms for the mosaic longest common subsequence problem
2007
2007
Classification of Documents Based on the Structure of Their DOM Trees
In this paper, we discuss kernels that can be applied for the classification of XML documents based on their DOM trees. DOM trees… 
Highly Cited
2004
Highly Cited
2004
Protein bioinformatics - an algorithmic approach to sequence and structure analysis
Description: Genomics and bioinformatics play an increasingly important and transformative role in medicine, society and… 
2003
2003
Alignment between Two Multiple Alignments
Alignment of two multiple alignments arises naturally when constructing approximate multiple sequence alignments progressively… 
1992
1992
Approximate regular expression pattern matching with concave gap penalties
Given a sequenceA of lengthM and a regular expressionR of lengthP, an approximate regular expression pattern-matching algorithm… 
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