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EcoCyc

In bioinformatics EcoCyc is a biological database for the bacterium Escherichia coli K-12. The EcoCyc project performs literature-based curation of… 
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BioinformaticsBiological databaseGeneric Model Organism DatabaseList of biological databases

Papers overview

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2014
2014
A small heat shock protein enables Escherichia coli to grow at a lethal 4 temperature of 50 o C conceivably by maintaining cell envelope 5 integrity
10 State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, 11 and Center for Protein Science, Peking… 
2012
2012
From Knowledge Represented in Frame-Based Languages to Declarative Representation and Reasoning via ASP
In this paper we encode some of the reasoning methods used in frame based knowledge representation languages in answer set… 
2009
2009
The Multiple Scientific Disciplines Served by EcoCyc
The EcoCyc database integrates information about the E. coli genome, its metabolic pathways, and its regulatory network. EcoCyc… 
2007
2007
Genome-specific models of bacterial cells and reverse engineering of prokaryote biology
Project Goals: Genome-specific models of bacterial cells and reverse engineering of prokaryote biology. A deep and broad… 
2006
2006
From Syntax to Semantics in Systems Biology Towards Automated Reasoning Tools
  • F. Fages
  • Trans. Comp. Sys. Biology
  • 2006
  • Corpus ID: 740483
Mathematical biology has for a long time investigated the dynamics of biomolecular systems by developing numerical models… 
2004
2004
Ontology-Driven Workflow Management for Biosequence Processing Systems
Researchers typically need to combine Bioinformatics processes to perform larger, more complex tasks, expressed as workflows… 
2004
2004
Integrating Biopathway Databases for Large-scale Modeling and Simulation
Biopathway databases have been developed, such as KEGG and EcoCyc, that compile interaction structures of biopathways together… 
2003
2003
Sixth Annual Bio-ontologies Meeting Brisbane, 2003 Contents 1 Programme 5 2 Indexing Medline with Go 7
Review
2002
Review
2002
Microbial genomes to metabolism
NATURE REVIEWS | GENETICS VOLUME 3 | OCTOBER 2002 | 733 Microbial genomes to metabolism • http://www.biocyc.org/ The BioCyc web… 
2001
2001
Nutrition-Related Analysis of Pathway/Genome Databases
We present an algorithm that solves two related problems in the analysis of metabolic networks stored within a pathway/genome… 
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