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Cytoscape
Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression…
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33 relations
BOND
BioMart
Bioinformatics
Biological network inference
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Broader (1)
Systems biology
Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
Review
2015
Review
2015
Data-driven Biomarker and Drug Discovery using Network-based Approach
Fuhai Li
2015
Corpus ID: 53990806
An increasing body of large-scale genomic profiling data has been being generated on many diseases including cancers and on a…
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2015
2015
A Visual Ontology Management System for Handling, Integrating and Enriching Semantic Repositories
Daniele Toti
,
Andrea Longhi
International Conference on Intelligent…
2015
Corpus ID: 15637185
This paper presents a prototype system for managing ontological data from RDF semantic repositories, via an intuitive, graph…
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2015
2015
Visualizing Regulation in Rule-based Models
John A. P. Sekar
,
J. Tapia
,
J. Faeder
2015
Corpus ID: 14856403
Rule-based modeling is a powerful way to model kinetic interactions in biochemical systems. Rules enable a precise encoding of…
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2014
2014
Etude de quatre lichens marins, maritime ou terrestre et des bactéries associées : Evaluation de la diversité bactérienne et recherche de métabolites d’intérêt
D. Parrot
2014
Corpus ID: 82219288
L'efficacite des antibiotiques actuellement utilises dans le monde entier est en baisse a un rythme inquietant. La majorite des…
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2014
2014
A Nanopublication Framework for Biological Networks using Cytoscape.js
Jamie McCusker
,
Rui Yan
,
+5 authors
D. McGuinness
International Conference on Biomedical Ontology
2014
Corpus ID: 15887500
We leverage semantic technologies and Cytoscape.js to create a provenance-aware, probabilistic analysis platform for systems…
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2011
2011
Twitter and e-health: A case study of visualizing cancer networks on Twitter
D. Murthy
,
Alexander Gross
,
Scott A. Longwell
International Conference on Information Society
2011
Corpus ID: 15006072
This paper seeks to understand health-related social networks on social media websites. The paper explores fundamental questions…
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2011
2011
Identificación de genes específicos de enfermedad periodontal mediante microarray
Antonio López
2011
Corpus ID: 84078885
2009
2009
PNmerger:a Cytoscape Plugin to Merge Biological Pathways and Protein Interaction Networks
Sun-Young Han
2009
Corpus ID: 87503791
PNmerger (a biological Pathway and protein Network merger) is a java based plugin for the widely used open source Cytoscape…
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2009
2009
Multiple step social structure analysis with Cytoscape
Hao Zhou
,
Anna A. Shaverdian
,
H. V. Jagadish
,
G. Michailidis
IEEE Symposium on Visual Analytics Science and…
2009
Corpus ID: 23770897
Cytoscape is a popular open source tool for biologists to visualize interaction networks. We find that it offers most of the…
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2007
2007
BiNoM : a Cytoscape plugin for using and analyzing biological networks
A. Zinovyev
,
E. Viara
,
Laurence Calzone
,
E. Barillot
2007
Corpus ID: 14834654
BiNoM (BIological NetwOrk Manager) is a Cytoscape plugin, developed to facilitate the manipulation of biological networks…
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