Cytoscape

Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression… (More)
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BONDBioMartBioinformaticsBiological network inference
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Systems biology

Papers overview

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Highly Cited
2015
Highly Cited
2015
CytoNCA: A cytoscape plugin for centrality analysis and evaluation of protein interaction networks
BACKGROUND AND SCOPE Nowadays, centrality analysis has become a principal method for identifying essential proteins in biological… (More)
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Highly Cited
2013
Highly Cited
2013
CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data
SUMMARY The CluePedia Cytoscape plugin is a search tool for new markers potentially associated to pathways. CluePedia calculates… (More)
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Highly Cited
2011
Highly Cited
2011
Cytoscape 2.8: new features for data integration and network visualization
UNLABELLED Cytoscape is a popular bioinformatics package for biological network visualization and data integration. Version 2.8… (More)
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Highly Cited
2011
Highly Cited
2011
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
In the post-genomic era, the rapid increase in high-throughput data calls for computational tools capable of integrating data of… (More)
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Highly Cited
2010
Highly Cited
2010
Cytoscape Web: an interactive web-based network browser
UNLABELLED Cytoscape Web is a web-based network visualization tool-modeled after Cytoscape-which is open source, interactive… (More)
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Highly Cited
2010
Highly Cited
2010
GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop
UNLABELLED The GeneMANIA Cytoscape plugin brings fast gene function prediction capabilities to the desktop. GeneMANIA identifies… (More)
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Highly Cited
2009
Highly Cited
2009
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
We have developed ClueGO, an easy to use Cytoscape plug-in that strongly improves biological interpretation of large lists of… (More)
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Highly Cited
2009
Highly Cited
2009
Integrating and annotating the interactome using the MiMI plugin for cytoscape
UNLABELLED The MiMI molecular interaction repository integrates data from multiple sources, resolves interactions to standard… (More)
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Highly Cited
2007
Highly Cited
2007
Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation
UNLABELLED Cerebral (Cell Region-Based Rendering And Layout) is an open-source Java plugin for the Cytoscape biomolecular… (More)
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Highly Cited
2005
Highly Cited
2005
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
The Biological Networks Gene Ontology tool (BiNGO) is an open-source Java tool to determine which Gene Ontology (GO) terms are… (More)
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