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CHARMM

Known as: Charm, CHARMM27, CHARMM19 
Chemistry at Harvard Macromolecular Mechanics (CHARMM ) is the name of a widely used set of force fields for molecular dynamics, and the name for the… 
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ARM architectureAmiraAscalaph DesignerAssisted Model Building with Energy Refinement (AMBER)

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2009
2009
Life science application support in an interoperable e-science environment
In the last decade, life science applications have become more and more integrated into e-Science environments, hence they are… 
2007
2007
Molecular dynamics simulation of the preferred conformations of 2-thiouridine in aqueous solution
Transfer RNA (tRNA) molecules display a large diversity of posttranscriptionally modified nucleosides at the anticodon wobble at… 
2005
2005
Temperature dependence of the transport coefficients of ions from molecular dynamics simulations
2005
2005
Clustered DBMS scalability under unified Ethernet fabric
In this paper, we study the performance of a clustered DBMS running an on-line transaction processing (OLTP) workload and using… 
2004
2004
Permeation dynamics of chloride ions in the ClC-0 and ClC-1 channels
2002
2002
Charge location on gas phase peptides
2001
2001
Combinations of simulation and integral equation theory
Much work has been done to accelerate the prediction of structure and thermodynamics, particularly of the chemical potential of… 
2000
2000
Protein structure in anisotropic environments: Unique structural fold from orientational constraints
The mathematical foundation of the determination of protein structure from orientational constraints is described. The tools used… 
Highly Cited
1999
Highly Cited
1999
Experimental Charge Densities and Intermolecular Interactions: Electrostatic and Topological Analysis of DL-Histidine
A high-resolution, low-temperature X-ray diffraction data set on dl-histidine, collected with a CCD detector, is used in the… 
1991
1991
Theory of long time peptide dynamics: Test of various reduced descriptions and role of internal variables
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