Bioconductor

Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab… (More)
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Highly Cited
2015
Highly Cited
2015
ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
UNLABELLED ChIPseeker is an R package for annotating ChIP-seq data analysis. It supports annotating ChIP peaks and provides… (More)
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Highly Cited
2014
Highly Cited
2014
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
MOTIVATION The recently released Infinium HumanMethylation450 array (the '450k' array) provides a high-throughput assay to… (More)
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Highly Cited
2010
Highly Cited
2010
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
SUMMARY It is expected that emerging digital gene expression (DGE) technologies will overtake microarray technologies in the near… (More)
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Highly Cited
2009
Highly Cited
2009
arrayQualityMetrics—a bioconductor package for quality assessment of microarray data
SUMMARY The assessment of data quality is a major concern in microarray analysis. arrayQualityMetrics is a Bioconductor package… (More)
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Highly Cited
2009
Highly Cited
2009
flowCore: a Bioconductor package for high throughput flow cytometry
Recent advances in automation technologies have enabled the use of flow cytometry for high throughput screening, generating large… (More)
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Highly Cited
2009
Highly Cited
2009
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
UNLABELLED ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data… (More)
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Highly Cited
2007
Highly Cited
2007
pcaMethods - a bioconductor package providing PCA methods for incomplete data
UNLABELLED pcaMethods is a Bioconductor compliant library for computing principal component analysis (PCA) on incomplete data… (More)
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Highly Cited
2006
Highly Cited
2006
RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis
UNLABELLED While meta-analysis provides a powerful tool for analyzing microarray experiments by combining data from multiple… (More)
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Highly Cited
2005
Highly Cited
2005
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
biomaRt is a new Bioconductor package that integrates BioMart data resources with data analysis software in Bioconductor. It can… (More)
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Highly Cited
2005
Highly Cited
2005
Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis
UNLABELLED Quality Control is a fundamental aspect of successful microarray data analysis. Simpleaffy is a BioConductor package… (More)
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