Clinical likelihood ratios and balanced accuracy for 44 in silico tools against multiple large-scale functional assays of cancer susceptibility genes
@article{ubuk2021ClinicalLR, title={Clinical likelihood ratios and balanced accuracy for 44 in silico tools against multiple large-scale functional assays of cancer susceptibility genes}, author={Cankut Çubuk and Alice Garrett and S. Choi and Laura King and Chey Loveday and Bethany Torr and George J Burghel and Miranda Durkie and Alison Callaway and Rachel Robinson and James Drummond and Ian Berry and Andrew L. Wallace and Diana M. Eccles and Marc Tischkowitz and Nicola Whiffin and James S. Ware and Helen Hanson and Clare Turnbull and CanVIG-UK}, journal={Genetics in Medicine}, year={2021}, volume={23}, pages={2096 - 2104}, url={https://api.semanticscholar.org/CorpusID:235759052} }
Overall, REVEL and Meta-SNP had best balanced accuracy and might potentially be used at stronger evidence weighting than current ACMG/AMP prescription, in particular for predictions of benignity.
Topics
Predictive Performance (opens in a new tab)ACMG/AMP (opens in a new tab)Meta-SNP (opens in a new tab)Association For Molecular Pathology (opens in a new tab)Missense Variants (opens in a new tab)Deleteriousness (opens in a new tab)American College Of Medical Genetics And Genomics (opens in a new tab)Deleterious (opens in a new tab)Cancer Susceptibility Genes (opens in a new tab)Balanced Accuracy (opens in a new tab)
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