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SCOP: a structural classification of proteins database for the investigation of sequences and structures.
To facilitate understanding of, and access to, the information available for protein structures, we have constructed the Structural Classification of Proteins (scop) database. This database providesExpand
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WebLogo: a sequence logo generator.
WebLogo generates sequence logos, graphical representations of the patterns within a multiple sequence alignment. Sequence logos provide a richer and more precise description of sequence similarityExpand
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The Bioperl toolkit: Perl modules for the life sciences.
The Bioperl project is an international open-source collaboration of biologists, bioinformaticians, and computer scientists that has evolved over the past 7 yr into the most comprehensive library ofExpand
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Data growth and its impact on the SCOP database: new developments
TLDR
The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationships. Expand
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SCOP database in 2004: refinements integrate structure and sequence family data
TLDR
The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationships. Expand
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The Transcriptional Landscape of the Mammalian Genome
This study describes comprehensive polling of transcription start and termination sites and analysis of previously unidentified full-length complementary DNAs derived from the mouse genome. WeExpand
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Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
To better understand the role of alternative splicing, we conducted a large-scale analysis of reliable alternative isoforms of known human genes. Each isoform was classified according to its spliceExpand
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The ASTRAL compendium for protein structure and sequence analysis
TLDR
The ASTRAL compendium provides several databases and tools to aid in the analysis of protein structures, particularly through the use of their sequences. Expand
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The Developmental Transcriptome of Drosophila melanogaster
Drosophila melanogaster is one of the most well studied genetic model organisms, nonetheless its genome still contains unannotated coding and non-coding genes, transcripts, exons, and RNA editingExpand
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Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
TLDR
Drosophila model organism Encyclopedia of DNA Elements (modENCODE) project is comprehensively mapping transcripts, histone modifications, chromosomal proteins, transcription factors, replication proteins and intermediates, and nucleosome properties across a developmental time course and in multiple cell lines. Expand
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