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libSBML
LibSBML is an open-source software library that provides an application programming interface (API) for the SBML (Systems Biology Markup Language…
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Apache Tomcat
Apache Xerces
Application programming interface
BioModels Database
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Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
2015
2015
SimpleSBML: A Python package for creating and editing SBML models
Caroline Cannistra
,
Kyle Medley
,
H. Sauro
bioRxiv
2015
Corpus ID: 61794957
Summary In this technical report we describe a simple extension to python-libSBML that allows users of Python to more easily…
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Review
2014
Review
2014
Visualization of Biological Processes Described by Models of Apoptosis
R. Muhamedyev
,
A. Mansharipova
,
E. Muhamedyeva
2014
Corpus ID: 14557062
Visualization of biochemical processes is important for understanding various phenomena in living organisms. One of the famous…
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2013
2013
AMBIENT: Active Modules for Bipartite Networks. Using high-throughput transcrip-
2013
Corpus ID: 267919888
tomic data to dissect metabolic response. Supplementary Methods Input data and outputs ambient requires two input files to run a…
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2011
2011
The FreeMABSys Project and the MABSys Library
F. Lemaire
2011
Corpus ID: 124880782
2011
2011
Tav4SB: grid environment for analysis of kinetic models of biological systems
A. Gambin
,
S. Lasota
,
Michal Lula
,
M. Rybiński
2011
Corpus ID: 14198363
Taverna Workbench eases integration of software tools for life science research in experiments expressed as workflows. The…
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2009
2009
Systems biology libAnnotationSBML : a library for exploiting SBML annotations
Neil Swainston
,
P. Mendes
2009
Corpus ID: 14000722
Summary: The Systems Biology Markup Language (SBML) is an established community XML format for the markup of biochemical models…
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2008
2008
semanticSBML a Tool for Creating , Checking , Annotating and Merging of SBML Documents
F. Krause
2008
Corpus ID: 15073573
The System Biology Markup Language (SBML) is a common language for expressing biochemical sets of reactions that are accompanied…
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Review
2007
Review
2007
A tutorial about SBML and SBML Level 2 Version 2
M. Hucka
,
Sarah M. Keating
2007
Corpus ID: 196094460
The Systems Biology Markup Language (SBML) is a machine-readable model representation language for software tools in…
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2005
2005
SBML ODE Solver Library: a command-line tool and library for numerical analysis of reaction networks
Rainer Machné
,
A. Finney
,
S. Widder
,
Stefan Müller
,
Christoph Flamm
2005
Corpus ID: 15494428
The SBML ODE Solver Library (SOSlib) is a command-line oriented tool and programming library for construction and numerical…
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