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Threading (protein sequence)

Known as: Fold recognition, Protein threading, Threading 
Protein threading, also known as fold recognition, is a method of protein modeling which is used to model those proteins which have the same fold as… 
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Related topics

Related topics

12 relations

Broader (1)

Bioinformatics
Branch and boundDynamic programmingHHsearchHidden Markov model

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
Review
2009
Review
2009
Folding@Home and Genome@Home: Using distributed computing to tackle previously intractable problem
For decades, researchers have been applying computer simulation to address problems in biology. However, many of these "grand… 
2008
2008
Boosting Methods for Protein Fold Recognition: An Empirical Comparison
Protein fold recognition is the prediction of protein's tertiary structure (Fold) given the protein's sequence without relying on… 
Highly Cited
2007
Highly Cited
2007
BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btm527 Structural bioinformatics Support Vector Machine-based classification of protein folds
  • 2007
  • Corpus ID: 580801
Highly Cited
2006
Highly Cited
2006
Structural bioinformatics A machine learning information retrieval approach to protein fold recognition
Motivation:Recognizing proteins that have similar tertiary structure is the key step of template-based protein structure… 
2006
2006
Ensemble of classifiers for protein fold recognition
2005
2005
A multi-level approach to SCOP fold recognition
The classification of proteins based on their structure can play an important role in the deduction or discovery of protein… 
2004
2004
Multi-Class Protein Fold Recognition Using Multi-Objective Evolutionary Algorithms
Protein fold recognition (PFR) is an important approach to structure discovery without relying on sequence similarity. In the… 
Highly Cited
2001
Highly Cited
2001
New energy terms for reduced protein models implemented in an off‐lattice force field
Parameterization and test calculations of a reduced protein model with new energy terms are presented. The new energy terms… 
Highly Cited
1999
Highly Cited
1999
Algorithmic aspects of protein structure similarity
We show that calculating contact map overlap (a measure of similarity of protein structures) is NP-hard, but can be solved in… 
Highly Cited
1997
Highly Cited
1997
On the approximation of protein threading
In this paper, we study the protein threading problem, which was proposed for predicting a folded 3D protein structure from an… 
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