Threading (protein sequence)

Known as: Fold recognition, Protein threading, Threading 
Protein threading, also known as fold recognition, is a method of protein modeling which is used to model those proteins which have the same fold as… (More)
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Broader (1)

Bioinformatics
Branch and boundDynamic programmingHHsearchHidden Markov model
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Papers overview

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Highly Cited
2005
Highly Cited
2005
Protein structure prediction servers at University College London
A number of state-of-the-art protein structure prediction servers have been developed by researchers working in the… (More)
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Highly Cited
2005
Highly Cited
2005
FFAS03: a server for profile–profile sequence alignments
The FFAS03 server provides a web interface to the third generation of the profile-profile alignment and fold-recognition… (More)
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2004
2004
Wurst: a protein threading server with a structural scoring function, sequence profiles and optimized substitution matrices
Wurst is a protein threading program with an emphasis on high quality sequence to structure alignments (http://www.zbh.uni… (More)
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Highly Cited
2003
Highly Cited
2003
Raptor: Optimal Protein Threading by Linear Programming
This paper presents a novel linear programming approach to do protein 3-dimensional (3D) structure prediction via threading… (More)
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Highly Cited
2003
Highly Cited
2003
EVA: evaluation of protein structure prediction servers
EVA (http://cubic.bioc.columbia.edu/eva/) is a web server for evaluation of the accuracy of automated protein structure… (More)
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2002
2002
Protein Threading by Linear Programming
Protein three-dimensional structure prediction through threading approach has been extensively studied and various models and… (More)
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Highly Cited
2001
Highly Cited
2001
A study of quality measures for protein threading models
Prediction of protein structures is one of the fundamental challenges in biology today. To fully understand how well different… (More)
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Highly Cited
2001
Highly Cited
2001
Multi-class protein fold recognition using support vector machines and neural networks
MOTIVATION Protein fold recognition is an important approach to structure discovery without relying on sequence similarity. We… (More)
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Highly Cited
2000
Highly Cited
2000
The PSIPRED protein structure prediction server
SUMMARY The PSIPRED protein structure prediction server allows users to submit a protein sequence, perform a prediction of their… (More)
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Highly Cited
1998
Highly Cited
1998
Hidden Markov models for detecting remote protein homologies
MOTIVATION A new hidden Markov model method (SAM-T98) for finding remote homologs of protein sequences is described and evaluated… (More)
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