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Substitution matrix

In bioinformatics and evolutionary biology, a substitution matrix describes the rate at which one character in a sequence changes to other character… 
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BLASTBLOSUMBioinformaticsCS-BLAST

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
Review
2016
Review
2016
Impact of Cost and Time Overrun on Building Construction Projects
This dissertation presents a study made on causes, effects and controls of change orders in large building construction in Morena… 
2016
2016
A data-driven approach to chord similarity and chord mutability
Assessing the relationship between chord sequences is an important ongoing research topic in the fields of music cognition and… 
Review
2012
Review
2012
Codon Evolution: Mechanisms and Models
The unifying principle in almost all of bioinformatics is sequence analysis: no matter if you are predicting the structure of… 
2011
2011
Phylogenetic automata, pruning, and multiple alignment
We present an extension of Felsenstein's algorithm to indel models defined on entire sequences, without the need to condition on… 
2008
2008
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a… 
2008
2008
The Differential Approach to Demand Analysis and the Rotterdam Model
This paper presents the differential approach to applied demand analysis. The demand systems of this approach are general, having… 
2008
2008
Pairwise DNA Alignment with Sequence Specific Transition-Transversion Ratio Using Multiple Parameter Sets
Pairwise DNA and protein sequence alignment is an underlying task in bioinformatics which forms the basis of many other… 
2003
2003
Refining tree recruitment models
We used a micrometeorological dispersal model to simulate seed and seedling distributions derived from subcanopy balsam fir… 
2003
2003
Pattern Discovery Allowing Wild-Cards, Substitution Matrices, and Multiple Score Functions
Pattern discovery has many applications in finding functionally or structurally important regions in biological sequences… 
1991
1991
A Characterization of the Quadratic Irrationals
Abstract Let α be a positive irrational real number, and let fα (n) = [(n + l)α] — [nα] — [α],n > 1, where [x] denotes the… 
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