String kernel

In machine learning and data mining, a string kernel is a kernel function that operates on strings, i.e. finite sequences of symbols that need not be… (More)
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ApproximationBioinformaticsCluster analysisData mining
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Natural language processing

Papers overview

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2016
2016
Transfer String Kernel for Cross-Context DNA-Protein Binding Prediction
Through sequence-based classification, this paper tries to accurately predict the DNA binding sites of transcription factors (TFs… (More)
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2010
2010
Meta learning on string kernel SVMs for string categorization
Even though Support Vector Machines (SVMs) are capable of identifying patterns in high dimensional spaces that are presented by… (More)
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2007
2007
The RNA String Kernel for siRNA Efficacy Prediction
String kernels directly model sequence similarities without the necessity of extracting numerical features in a vector space… (More)
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2007
2007
A Randomized String Kernel and Its Application to RNA Interference
String kernels directly model sequence similarities without the necessity of extracting numerical features in a vector space… (More)
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Highly Cited
2006
Highly Cited
2006
Large Scale Multiple Kernel Learning
While classical kernel-based learning algorithms are based on a single kernel, in practice it is often desirable to use multiple… (More)
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2005
2005
Using string kernel to predict signal peptide cleavage site based on subsite coupling model
Owing to the importance of signal peptides for studying the molecular mechanisms of genetic diseases, reprogramming cells for… (More)
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2005
2005
Genre Classification via an LZ78-Based String Kernel
We develop the notion of normalized information distance (NID) [7] into a kernel distance suitable for use with a Support Vector… (More)
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2002
2002
Syllables and other String Kernel Extensions
Recently, the use of string kernels that compare documents as a string of letters has been shown to achieve good results on text… (More)
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Highly Cited
2001
Highly Cited
2001
The Spectrum Kernel: A String Kernel for SVM Protein Classification
We introduce a new sequence-similarity kernel, the spectrum kernel, for use with support vector machines (SVMs) in a… (More)
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Highly Cited
2000
Highly Cited
2000
Text Classification using String Kernels
We introduce a novel kernel for comparing two text documents. The kernel is an inner product in the feature space consisting of… (More)
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