Rule-based modeling

Rule-based modeling is a modeling approach that uses a set of rules that indirectly specifies a mathematical model. The rule-set can either be… (More)
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Topic mentions per year

Topic mentions per year

1996-2018
02419962018

Papers overview

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2014
2014
Detailed modeling and simulation of biochemical systems is complicated by the problem of combinatorial complexity, an explosion… (More)
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2012
2012
Rule-based modeling (RBM) is a powerful and increasingly popular approach to modeling cell signaling networks. However, novel… (More)
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2012
2012
The modular design of synthetic gene circuits via composable parts (DNA segments) and pools of signal carriers (molecules such as… (More)
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2011
2011
SUMMARY Rule-based modeling (RBM) is a powerful and increasingly popular approach to modeling intracellular biochemistry. Current… (More)
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Highly Cited
2011
Highly Cited
2011
Proteins, individual cells, and cell populations denote different levels of an organizational hierarchy, each of which with its… (More)
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2011
2011
We introduce RuleBender, a novel visualization system for the integrated visualization, modeling and simulation of rule-based… (More)
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2009
2009
Rule-based modeling is an approach to modeling biochemical kinetics in which proteins and other biological components are modeled… (More)
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2009
2009
Transcriptional attenuation at E. coli's tryptophan operon is a prime example of RNA-mediated gene regulation. In this paper, we… (More)
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Highly Cited
2005
Highly Cited
2005
We present a method for generating a biochemical reaction network from a description of the interactions of components of… (More)
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Highly Cited
1998
Highly Cited
1998
This article is a reaction to recent publications on rulebased modeling using fuzzy set theory and fuzzy logic. The interest in… (More)
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