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Phylogenetic footprinting
Known as:
Footprint (disambiguation)
Phylogenetic footprinting is a technique used to identify transcription factor binding sites (TFBS) within a non-coding region of DNA of interest by…
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Related topics
Related topics
3 relations
Footprinting
Gene prediction
Broader (1)
Phylogenetics
Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
2016
2016
ANFIS-based fuzzy systems for searching dna-protein binding sites
Dianhui Wang
,
M. Alhamdoosh
,
W. Pedrycz
bioRxiv
2016
Corpus ID: 15993109
Transcriptional regulation mainly controls how genes are expressed and how cells behave based on the transcription factor (TF…
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2011
2011
Phylogenetic Footprinting and Consistent Sets of Local Aligments
W. Otto
,
P. Stadler
,
Sonja J. Prohaska
Annual Symposium on Combinatorial Pattern…
2011
Corpus ID: 31506768
The problem of constructing alternative local multiple sequence alignments from a collection of local pairwise alignments arises…
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2008
2008
BMC Bioinformatics BioMed Central Methodology article c-REDUCE: Incorporating sequence conservation to detect motifs
2008
Corpus ID: 267897124
2006
2006
Pathway to functional studies: pipeline linking phylogenetic footprinting and transcription-factor binding analysis
Nagesh Chakka
,
J. Gready
2006
Corpus ID: 16600209
Identification of transcription-factor binding sites is a critical first step in studying transcriptional regulation of genes…
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2004
2004
Suboptimal Local Alignments Across Multiple Scoring Schemes
Morris Michael
,
C. Dieterich
,
J. Stoye
Workshop on Algorithms in Bioinformatics
2004
Corpus ID: 18276309
Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to…
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2004
2004
Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting
D. Shigemizu
,
O. Maruyama
Workshop on Algorithms in Bioinformatics
2004
Corpus ID: 1536845
We consider the problem of finding candidates for regulatory elements of alternative splicing events from orthologous genes…
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2003
2003
Phylogenetic Footprinting of Co-expressed Genes by Tree-Gibbs Sampling
Stefan Van Yper
,
O. Thas
,
J. Ottoy
,
W. Criekinge
2003
Corpus ID: 80747798
Promotors and transcription factors regulate gene expression in eukaryotes. Eukaryotic transcription factors are highly modular…
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2003
2003
Analysis of an evolutionarily conserved distant regulatory region downstream of the Pax6 gene
Jorn Lakowski
2003
Corpus ID: 56071773
The evolutionarily conserved transcription factor Pax6 is crucial to the development of a variety of tissues including the…
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2002
2002
Discovery of Regulatory Elements by a Computational Method for References
Mathieu Blanchette
,
M. Tompa
,
Phylogenetic Footprinting
2002
Corpus ID: 263596444
service Email alerting click here top right corner of the article or Receive free email alerts when new articles cite this…
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Review
2000
Review
2000
Computational Identiication and Analysis of Eukaryotic Promoters: New Algorithms on the Traces of Gene Regulation Diierences of Motif Identiication Approaches
U. Ohler
,
H. Niemann
2000
Corpus ID: 17880965
With the information of the complete DNA sequence of several higher eukaryotes as well as expression patterns of thousands of…
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