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PeptideProphet

A software package for the statistical validation of peptide identifications made by tandem mass spectrometry (MS/MS) and database searching.
National Institutes of Health

Papers overview

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2013
2013
We first propose a new method to process peptide identification reports from databases search engines. Then via it we develop a… 
2012
2012
The identification of proteins from spectra derived from a tandem mass spectrometry experiment involves several challenges… 
2012
2012
Protein inference is an important computational step in proteomics. There exists a natural nest relationship between protein… 
2012
2012
Protein inference is a critical computational step in the study of proteomics. It lays the foundation for further structural and… 
2012
2012
Limited spectrum coverage is a problem in shotgun proteomics. Replicates are generated to improve the spectrum coverage. When… 
2011
2011
Accurate determination of protein phosphorylation is challenging, particularly for researchers who lack access to a high-accuracy… 
2010
2010
Mass spectrometry provides a high-throughput way to identify proteins in biological samples. In a typical experiment, proteins in… 
2009
2009
Tandem mass spectrometry (MS/MS) has been widely used in proteomics studies. Multiple algorithms have been developed for… 
2007
2007
The community of proteomic researchers has been generating openly available software infrastructure for systematic proteomic data… 
2007
2007
Following the sequencing of the human genome, the next step is the verification and functional annotation of all predicted genes…