Skip to search formSkip to main content
You are currently offline. Some features of the site may not work correctly.

PeptideProphet

A software package for the statistical validation of peptide identifications made by tandem mass spectrometry (MS/MS) and database searching.
National Institutes of Health

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
Highly Cited
2012
Highly Cited
2012
PeptideProphet is a post-processing algorithm designed to evaluate the confidence in identifications of MS/MS spectra returned by… Expand
  • table 1
  • figure 1
  • figure 2
  • figure 3
  • figure 4
Is this relevant?
Highly Cited
2011
Highly Cited
2011
The combination of tandem mass spectrometry and sequence database searching is the method of choice for the identification of… Expand
  • figure 1
  • figure 2
  • figure 3
  • figure 4
  • figure 5
Is this relevant?
Highly Cited
2010
Highly Cited
2010
The challenge of estimating false discovery rates (FDR) in peptide identification from MS/MS spectra has received increased… Expand
  • figure 1
  • figure 2
  • figure 3
Is this relevant?
Highly Cited
2008
Highly Cited
2008
Development of robust statistical methods for validation of peptide assignments to tandem mass (MS/MS) spectra obtained using… Expand
Is this relevant?
Highly Cited
2008
Highly Cited
2008
Tandem mass spectrometry (MS/MS) is frequently used in the identification of peptides and proteins. Typical proteomic experiments… Expand
  • table 1
  • table 2
  • table 3
  • table 4
  • table 5
Is this relevant?
Highly Cited
2008
Highly Cited
2008
Development of statistical methods for assessing the significance of peptide assignments to tandem mass spectra obtained using… Expand
Is this relevant?
Highly Cited
2007
Highly Cited
2007
Amniotic fluid is a dynamic and complex mixture that reflects the physiological status of the developing fetus. In this study… Expand
  • figure 1
  • figure 2
  • figure 3
  • figure 4
  • figure 5
Is this relevant?
Highly Cited
2006
Highly Cited
2006
MOTIVATION Tandem mass spectrometry (MS/MS) identifies protein sequences using database search engines, at the core of which is a… Expand
  • figure 1
Is this relevant?
Highly Cited
2005
Highly Cited
2005
MS/MS and associated database search algorithms are essential proteomic tools for identifying peptides. Due to their widespread… Expand
  • figure 1
  • table 1
  • table 1
  • figure 2
  • figure 3
Is this relevant?
Highly Cited
2005
Highly Cited
2005
A very popular approach in proteomics is the so-called "shotgun LC-MS/MS" strategy. In its mostly used form, a total protein… Expand
Is this relevant?