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Open Bioinformatics Foundation

Known as: OBF 
The Open Bioinformatics Foundation is a non profit, volunteer run organization focused on supporting open source programming in bioinformatics. The… Expand
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Papers overview

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2015
2015
Reproducible and User-Controlled Software Environments in HPC with Guix
Support teams of high-performance computing (HPC) systems often find themselves between a rock and a hard place: on one hand… Expand
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Highly Cited
2011
Highly Cited
2011
Computing Strongly Connected Components in Parallel on CUDA
The problem of decomposing a directed graph into its strongly connected components is a fundamental graph problem inherently… Expand
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2011
2011
Distributed Algorithms for SCC Decomposition
We study existing parallel algorithms for the decomposition of a partitioned graph into its strongly connected components (SCCs… Expand
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2010
2010
Autotrophic and heterotrophic metabolism of microbial planktonic communities in an oligotrophic coastal marine ecosystem: seasonal dynamics and episodic events
Abstract. A 18 month study was performed in the Bay of Villefranche to assess the episodic and seasonal variation of autotrophic… Expand
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2009
2009
All-Optical Format Conversion From RZ to NRZ Utilizing Microfiber Resonator
We propose an all-optical return-to-zero (RZ) to nonreturn-to-zero (NRZ) format converter utilizing a microfiber knot resonator… Expand
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2009
2009
Exact Search Directions for Optimization of Linear and Nonlinear Models Based on Generalized Orthonormal Functions
A novel technique for selecting the poles of orthonormal basis functions (OBF) in Volterra models of any order is presented. It… Expand
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2009
2009
Role of ocean biology-induced climate feedback in the modulation of El Nino-Southern Oscillation
Received 4 November 2008; revised 17 December 2008; accepted 29 December 2008; published 10 February 2009. (1 )E l Nino-Southern… Expand
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2008
2008
Improved Distributed Algorithms for SCC Decomposition
We study and improve the OBF technique [Barnat, J. and P.Moravec, Parallel algorithms for finding SCCs in implicitly given graphs… Expand
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Highly Cited
2006
Highly Cited
2006
Error-free all-optical wavelength conversion at 160 gb/s using a semiconductor optical amplifier and an optical bandpass filter
Error-free and pattern-independent wavelength conversion at 160 Gb/s is demonstrated. The wavelength converter utilizes a… Expand
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2000
2000
Clustering for edge-cost minimization (extended abstract)
We address the problem of partitioning a set of n points into clusters, so as to minimize the sum, over all intracluster pairs of… Expand
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