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HyPhy

HYPHY (/ˈhaɪfaɪ/ HY-fy) is a free multiplatform (Mac, Windows and UNIX) Computational phylogenetics software package intended to perform maximum… 
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Computational phylogeneticsList of phylogenetics software

Papers overview

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2015
2015
Genetic diversity and evidence of recombination in the coat protein gene of Onion yellow dwarf virus
The coat protein (CP) coding region of seven Polish Onion yellow dwarf virus (OYDV) isolates was sequenced. It was 771 bp long in… 
2014
2014
Calreticulin molecular evolution: a strong purifying and episodic diversifying selection result
Calreticulin (CRT) is a low molecular weight protein present in vertebrates, invertebrates and higher plants. Its multiple… 
2012
2012
The effect of evolutionary rate estimation methods on correlations observed between substitution rates in models of evolution
2012
2012
Comparison of Selection Pressures on the Haemagglutinin (HA) Gene of Pandemic (2009) and Seasonal Influenza A Viruses in Kenya
2011
2011
Microsoft Word - 2011-moury-mbe
The dN/dS ratio between nonsynonymous and synonymous substitution rates has been used extensively to identify codon positions… 
2005
2005
User's guide for CodonRates 1.0
What is CodonRates ? CodonRates is a program to estimate divergence times and ‘absolute rates’ of synonymous and nonsynonymous… 
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