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Generalized suffix tree
Known as:
GST
, Generalised suffix tree
In computer science, a generalized suffix tree is a suffix tree for a set of strings. Given the set of strings of total length , it is a Patricia…
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Bioinformatics
Computer science
Longest common substring problem
String (computer science)
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Papers overview
Semantic Scholar uses AI to extract papers important to this topic.
2017
2017
Space-efficient K-MER algorithm for generalized suffix tree
Freeson Kaniwa
,
V. Kuthadi
,
Otlhapile Dinakenyane
,
H. Schroeder
arXiv.org
2017
Corpus ID: 6939158
Suffix trees have emerged to be very fast for pattern searching yielding O (m) time, where m is the pattern size. Unfortunately…
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2017
2017
A Distributed Approach for Constructing Generalized Suffix Tree on Spark by Using Optimized Elastic Range Algorithm
Yunhao Li
,
Jiahui Jin
,
Runqun Xiong
,
Junzhou Luo
International Conference on Advanced Cloud and…
2017
Corpus ID: 11189832
The generalized suffix tree (GST) is a tree structure that is widely used by string-based applications such as DNA sequence…
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2015
2015
Construction of a de Bruijn Graph for Assembly from a Truncated Suffix Tree
Bastien Cazaux
,
T. Lecroq
,
Eric Rivals
Language and Automata Theory and Applications
2015
Corpus ID: 3152602
In the life sciences, determining the sequence of bio-molecules is essential step towards the understanding of their functions…
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2012
2012
Discovery of Delta Closed Patterns and Noninduced Patterns from Sequences
A. Wong
,
Dennis Zhuang
,
Gary C. L. Li
,
E. Lee
IEEE Transactions on Knowledge and Data…
2012
Corpus ID: 16979809
Discovering patterns from sequence data has significant impact in many aspects of science and society, especially in genomics and…
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2012
2012
A Length-variable Feature Code Based Fuzzy Duplicates Elimination Approach for Large Scale Chinese WebPages
Hongzhi Guo
,
Qingcai Chen
,
Cong Xin
,
Xiaolong Wang
Journal of Software
2012
Corpus ID: 16717713
Most of the existing Chinese webpage duplicate elimination approaches do not focus on noisy and fuzzy duplicates elimination. In…
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2009
2009
An Improved Text Clustering Algorithm of Generalized Suffix Tree
Wu Tao
2009
Corpus ID: 123818805
The original suffix tree clustering(STC) algorithm can not effectively process the nodes with text documents that differ greatly…
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2007
2007
Motif Search in DNA Sequences Using Generalized Suffix Tree
A. Mohapatra
,
P. Mishra
,
S. Padhy
10th International Conference on Information…
2007
Corpus ID: 14521345
There has been a growing interest in discovery of significant patterns in biological sequences that correspond to some structural…
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2005
2005
Dynamic indexes vs. static hierarchies for substring search
Nils Grimsmo
2005
Corpus ID: 59870950
This report explores the problem of substring search in a dynamic document set. The operations supported are document inclusion…
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2003
2003
Efficient Methods for Multigram Compound Discovery
Horng Jyh Paul Wu
,
Hong I Ng
,
Ruibin Gong
Pacific Asia Conference on Language, Information…
2003
Corpus ID: 208790797
Multigram language model has become important in Speech Recognition, Natural Language Processing and Information Retrieval. An…
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2003
2003
A Fast Method for Motif Detection and Searching in a Protein Structure Database
Arno Buchner
,
Hanjo Täubig
2003
Corpus ID: 46893011
We present a data structure based on suffix trees that provides fast methods for searching three-dimensional polypeptide…
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