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GeneRIF

A GeneRIF or Gene Reference Into Function is a short (255 characters or fewer) statement about the function of a gene. GeneRIFs provide a simple… 
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Broader (2)

BioinformaticsNatural language processing
Outline of natural language processingPubMedText Retrieval Conference

Papers overview

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2013
2013
GeneRIF indexing: sentence selection based on machine learning
A Gene Reference Into Function (GeneRIF) describes novel functionality of genes. GeneRIFs are available from the National Center… 
2009
2009
Mining Protein-Protein Interactions from GeneRIFs with OpenDMAP
We applied the OpenDMAP [1] and BioNLP-UIMA [2] NLP systems to the task of mining protein-protein interactions (PPIs) from… 
2007
2007
Mapping Biomedical Literature Annotations to Extract Gene-Disease Associations
The identification and ranking of candidate genes is a critical step in the search for the genetic basis of disease. Integrated… 
2006
2006
GeneRIF is a more comprehensive, current and computationally tractable source of gene-disease relationships than OMIM
Motivation: The human genome has been extensively annotated with Gene Ontology for biological functions, but minimally… 
Review
2006
Review
2006
Extracting information for biology
High-throughput methods like the large scale sequencing of the human genome dramatically increase our knowledge of genetics and… 
2003
2003
Similarity Computation in Novelty Detection and GeneRIF Annotation
s and the testing corpus including 9,005 abstracts. The details for our function extraction approach are illustrated as follows… 
2003
2003
Finiding Gene Function using LitMiner
NRC (National Research Council, Canada) submitted 2 sets of results for the primary task in the TREC Genome track. The systems… 
2003
2003
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification
The Biosemantics group at the Erasmus MC followed a thesaurus-based approach for the first task of the genomics track. The… 
2003
2003
SVM Approach to GeneRIF Annotation
In the biological domain, to extract the newly discovered functional features from massive literature is a major challenging… 
Review
2003
Review
2003
TREC GENOMICS Track Overview
The first year of TREC Genomics Track featured two tasks: ad hoc retrieval and information extraction. Both tasks centered around… 
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