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GENCODE

GENCODE is a scientific project in genome research and part of the ENCODE (ENCyclopedia Of DNA Elements) scale-up project. The GENCODE consortium was… 
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Papers overview

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2019
2019
Using GMQL-Web for Querying, Downloading and Integrating Public with Private Genomic Datasets
Recent integrative analyses using data from TCGA permit GWAS investigation of the genetic variants function, providing more… 
2018
2018
Tracing the evolution of long non-coding RNAs-Principles of comparative transcriptomics for splice site conservation and biological applications
Tracing the evolution of long non-coding RNAs Principles of comparative transcriptomics for splice site conservation and… 
2016
2016
The UK10K project identifies rare variants in health and disease
The contribution of rare and low-frequency variants to human traits is largely unexplored. Here we describe insights from… 
2015
2015
Manual for the R casper package
  • 2015
  • Corpus ID: 268932608
The function wrapKnown runs the whole analysis pipeline for a single sample, starting from a sorted and indexed BAM file and… 
2014
2014
The GENCODE Gene Set – where does a gene start and stop?
2014
2014
prefrontal cortex development and maturation Conserved expression of lincRNA during human and macaque Material
The current annotation of the human genome includes more than 12,000 long intergenic noncoding RNAs (lincRNA). While a handful of… 
2009
2009
GENCODE: Creating a Validated Manually Annotated Geneset for the Whole Human Genome
1Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK. 2Spanish National Cancer Research Centre… 
2006
2006
Comparison of Alternative Splicing Structures in Eukaryotes
Numerous databases of alternative splice forms have been generated over the recent years, which – beside of using heterogenous… 
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